ggKbase home page

L3_060_057G1_scaffold_459

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_459_1
unknown

Not on your lists

comp(3..65)
DNA (63bp) protein (21aa)

This feature has no annotations

L3_060_057G1_scaffold_459_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(162..1583)
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
sensor histidine kinase (EC:2.7.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H1X1_9CLOT
L3_060_057G1_scaffold_459_3
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1573..2271)
DNA (699bp) protein (233aa)
Putative transcriptional regulatory protein WalR n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2E963_9FIRM
Putative transcriptional regulatory protein WalR {ECO:0000313|EMBL:ERI90917.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
transcriptional regulatory protein ResD
L3_060_057G1_scaffold_459_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2583..3413
DNA (831bp) protein (277aa)
HTH DNA-binding protein n=2 Tax=Clostridium botulinum B RepID=B2TIN5_CLOBB
HTH DNA-binding protein
HTH DNA-binding protein {ECO:0000313|EMBL:ACD24168.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_060_057G1_scaffold_459_5
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3502..3807
DNA (306bp) protein (102aa)
TrpR-like protein YerC/YecD n=1 Tax=Clostridium colicanis 209318 RepID=N9XXU8_9CLOT
TrpR like protein, YerC/YecD
TrpR-like protein YerC/YecD {ECO:0000313|EMBL:ENZ00709.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
L3_060_057G1_scaffold_459_6
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3891..5240
DNA (1350bp) protein (450aa)
Phosphoglucosamine mutase {ECO:0000255|HAMAP-Rule:MF_01554}; EC=5.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01554};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Phosphoglucosamine mutase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=GLMM_CLOB8
glmM; phosphoglucosamine mutase
L3_060_057G1_scaffold_459_7
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5916..6416
DNA (501bp) protein (167aa)
Acetolactate synthase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FZY0_CLOPA
acetolactate synthase, small subunit
Acetolactate synthase {ECO:0000313|EMBL:ETD69263.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_060_057G1_scaffold_459_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6445..8040
DNA (1596bp) protein (532aa)
2-isopropylmalate synthase/homocitrate synthase family protein {ECO:0000313|EMBL:ABR32403.1}; EC=2.3.3.13 {ECO:0000313|EMBL:ABR32403.1};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPX3_CLOB8
putative alpha-isopropylmalate/homocitrate synthase family transferase
L3_060_057G1_scaffold_459_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8057..9316
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
leuC2; 3-isopropylmalate dehydratase large subunit LeuC (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=2 Tax=Clostridium butyricum RepID=M8J5X1_CLOBU
L3_060_057G1_scaffold_459_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9330..9815
DNA (486bp) protein (162aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000255|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01032}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01032};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01032}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Clostridium botulinum B RepID=LEUD_CLOBB
L3_060_057G1_scaffold_459_11
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9832..10824
DNA (993bp) protein (331aa)
leuB; 3-isopropylmalate dehydrogenase LeuB (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MGK6_9CLOT
L3_060_057G1_scaffold_459_12
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10828..12486
DNA (1659bp) protein (553aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
ilvD1; dihydroxy-acid dehydratase IlvD (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKN7_9CLOT
L3_060_057G1_scaffold_459_13
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12514..14187
DNA (1674bp) protein (558aa)
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EHI97228.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EHI97228.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBQ1_9CLOT
acetolactate synthase, large subunit, biosynthetic type
L3_060_057G1_scaffold_459_14
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14207..15208
DNA (1002bp) protein (334aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ilvC; ketol-acid reductoisomerase IlvC (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H1P5_9CLOT
L3_060_057G1_scaffold_459_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15549..16028
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=7 Tax=Clostridium difficile RepID=G6BC21_CLODI
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EHJ26827.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Transcriptional regulator, MarR family
L3_060_057G1_scaffold_459_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16049..18280
DNA (2232bp) protein (744aa)
ABC transporter family protein n=1 Tax=Clostridium difficile CD160 RepID=T3D8P6_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQF24279.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
ABC transporter ATP-binding protein/permease
L3_060_057G1_scaffold_459_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18270..20138
DNA (1869bp) protein (623aa)
ABC transporter, ATP-binding protein n=5 Tax=Clostridium difficile RepID=D5Q387_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH07615.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
ABC transporter ATP-binding protein/permease
L3_060_057G1_scaffold_459_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20332..20583
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WCH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU71805.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
GIY-YIG catalytic domain protein
L3_060_057G1_scaffold_459_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20635..21186)
DNA (552bp) protein (184aa)
Cotf n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVP1_CLOSA
cotf
Cotf {ECO:0000313|EMBL:AGX43492.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_060_057G1_scaffold_459_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21787..23613
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKQ9_9CLOT
glucosamine--fructose-6-phosphate aminotransferase, isomerizing
L3_060_057G1_scaffold_459_21
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23626..23793
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXS6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00684.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L3_060_057G1_scaffold_459_22
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24201..24893
DNA (693bp) protein (231aa)
Putative metal-dependent phosphoesterase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C5B7_9CLOT
Putative metal-dependent phosphoesterase {ECO:0000313|EMBL:EOR24473.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
putative metal-dependent phosphoesterase
L3_060_057G1_scaffold_459_23
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24929..25612
DNA (684bp) protein (228aa)
XRE family transcriptional regulator n=1 Tax=Clostridium tunisiense RepID=UPI00031A8B2C
XRE family transcriptional regulator {ECO:0000313|EMBL:KGK88322.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
DNA-binding response regulator
L3_060_057G1_scaffold_459_24
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25591..26604
DNA (1014bp) protein (338aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
Sensor histidine kinase n=1 Tax=Clostridium sp. BL8 RepID=T0PQ74_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_060_057G1_scaffold_459_25
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26715..27416
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3W9_9CLOT
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEZ85052.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
ABC transporter
L3_060_057G1_scaffold_459_26
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27425..29158
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI00031CFF24
ABC transporter {ECO:0000313|EMBL:KEZ85053.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
putative ABC transporter
L3_060_057G1_scaffold_459_27
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29212..31860)
DNA (2649bp) protein (883aa)
Putative ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F6C9_9CLOT
Putative ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:CDG00588.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
HAD ATPase, P-type, IC family protein
L3_060_057G1_scaffold_459_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32175..33242
DNA (1068bp) protein (356aa)
Mannose-1-phosphate guanylyltransferase n=2 Tax=Clostridium botulinum B RepID=U4P1N4_CLOBO
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Mannose-6-phosphate isomerase family protein {ECO:0000313|EMBL:AIY79481.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_060_057G1_scaffold_459_29
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33393..33752
DNA (360bp) protein (120aa)
Putative transcriptional repressor SmtB n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKR9_9CLOT
Putative transcriptional repressor SmtB {ECO:0000313|EMBL:EKY28594.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
cadmium efflux system accessory protein
L3_060_057G1_scaffold_459_30
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33769..35946
DNA (2178bp) protein (726aa)
cadA; cadmium-translocating P-type ATPase (EC:3.6.3.3)
Cadmium-translocating P-type ATPase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CFD5_9CLOT
Cadmium-translocating P-type ATPase {ECO:0000313|EMBL:EOR28064.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
Displaying items 1-30 of 88 in total

View Taxonomy