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L3_060_057G1_scaffold_564

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_564_1
Stomatobaculum longum, Stomatobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..576
DNA (576bp) protein (192aa)
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (EC:1.3.99.1)
Uncharacterized protein n=1 Tax=Stomatobaculum longum RepID=H1HS56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO18242.1}; TaxID=796942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Stomatobaculum.;" source="Stomatobaculum longum.;"
L3_060_057G1_scaffold_564_2
Megasphaera sp. UPII 135-E, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

582..1283
DNA (702bp) protein (234aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1)
Putative succinate dehydrogenase iron-sulfur subunit n=1 Tax=Megasphaera sp. UPII 135-E RepID=F9MMT4_9FIRM
Putative succinate dehydrogenase iron-sulfur subunit {ECO:0000313|EMBL:EGS36164.1}; TaxID=1000569 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. UPII 135-E.;"
L3_060_057G1_scaffold_564_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1420..1854
DNA (435bp) protein (145aa)
Predicted transcriptional regulators n=5 Tax=Clostridiales RepID=D4LZQ5_9FIRM
Predicted transcriptional regulators
Putative arsenical resistance operon repressor {ECO:0000313|EMBL:ERK51589.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_060_057G1_scaffold_564_4
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1818..2459)
DNA (642bp) protein (214aa)
Uncharacterized metal-binding protein conserved in archaea n=4 Tax=Clostridiales RepID=D4M0I5_9FIRM
Uncharacterized metal-binding protein conserved in archaea
Uncharacterized metal-binding protein conserved in archaea {ECO:0000313|EMBL:CBL27545.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_060_057G1_scaffold_564_5
unknown

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3171..3281
DNA (111bp) protein (37aa)

This feature has no annotations

L3_060_057G1_scaffold_564_6
unknown

Not on your lists

3281..3376
DNA (96bp) protein (32aa)

This feature has no annotations

L3_060_057G1_scaffold_564_7
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3426..3947
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B38354
Uncharacterized protein {ECO:0000313|EMBL:CDC09852.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L3_060_057G1_scaffold_564_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3982..4308
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZID5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07041.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
HIRAN domain.
L3_060_057G1_scaffold_564_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4499..4726
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP20852.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L3_060_057G1_scaffold_564_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4869..5417
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RTZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF39264.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_060_057G1_scaffold_564_11
Treponema vincentii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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5472..5732
DNA (261bp) protein (87aa)
prevent-host-death protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E6F8
Uncharacterized protein {ECO:0000313|EMBL:EPF46903.1}; TaxID=1125702 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema vincentii F0403.;"
hypothetical protein
L3_060_057G1_scaffold_564_12
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5722..6033
DNA (312bp) protein (104aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SJB8_9FIRM
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:EFP62442.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
addiction module toxin, RelE/StbE family
L3_060_057G1_scaffold_564_13
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6100..6327)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZPV7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA36421.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Hydrolases of the alpha/beta superfamily
L3_060_057G1_scaffold_564_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6337..7677)
DNA (1341bp) protein (447aa)
Putative efflux protein, MATE family n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZB6_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL27126.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_060_057G1_scaffold_564_15
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8101..8739)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LGF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY04111.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L3_060_057G1_scaffold_564_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9238..9447
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP20852.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L3_060_057G1_scaffold_564_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9777..11012
DNA (1236bp) protein (412aa)
Site-specific recombinase, phage integrase family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDB7_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDP20849.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Site-specific recombinase XerD
L3_060_057G1_scaffold_564_18
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(11748..13532)
DNA (1785bp) protein (595aa)
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L-fucose isomerase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLA2_TREBD
L3_060_057G1_scaffold_564_19
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(13549..14997)
DNA (1449bp) protein (483aa)
Rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y927_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:CDD30420.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
L3_060_057G1_scaffold_564_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14994..15428)
DNA (435bp) protein (145aa)
Fucose dissimilation pathway protein FucU (EC:5.1.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A403_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37830.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_060_057G1_scaffold_564_21
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(15440..16147)
DNA (708bp) protein (236aa)
L-fuculose-phosphate aldolase (EC:4.1.2.17)
L-fuculose-phosphate aldolase {ECO:0000313|EMBL:AEE15582.1}; EC=4.1.2.17 {ECO:0000313|EMBL:AEE15582.1};; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L-fuculose-phosphate aldolase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLA4_TREBD
L3_060_057G1_scaffold_564_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16179..17264)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77440.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphotransferase enzyme family.
L3_060_057G1_scaffold_564_23
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17292..17858)
DNA (567bp) protein (189aa)
Chromate transporter n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z7A9_EUBE2
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ACR73187.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_060_057G1_scaffold_564_24
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17855..18421)
DNA (567bp) protein (189aa)
Chromate transporter n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z7B0_EUBE2
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ACR73188.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_060_057G1_scaffold_564_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18440..19561)
DNA (1122bp) protein (374aa)
Anaerobic sulfatase maturase {ECO:0000313|EMBL:EFB77582.1}; EC=1.1.99.- {ECO:0000313|EMBL:EFB77582.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Anaerobic sulfatase maturase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIB4_9FIRM
Arylsulfatase regulator (Fe-S oxidoreductase)
L3_060_057G1_scaffold_564_26
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19558..20991)
DNA (1434bp) protein (478aa)
Arylsulfatase {ECO:0000313|EMBL:EFC98639.1}; EC=3.1.6.- {ECO:0000313|EMBL:EFC98639.1};; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
Arylsulfatase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AHQ3_9CLOT
sulfatase
L3_060_057G1_scaffold_564_27
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21071..22483)
DNA (1413bp) protein (471aa)
Alpha-L-fucosidase {ECO:0000313|EMBL:EJW17744.1}; EC=3.2.1.51 {ECO:0000313|EMBL:EJW17744.1};; TaxID=1206781 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei DSM 29.;"
alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZFC8_PAEAL
L3_060_057G1_scaffold_564_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22488..24167)
DNA (1680bp) protein (560aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase {ECO:0000313|EMBL:EFB77441.1}; EC=2.4.1.211 {ECO:0000313|EMBL:EFB77441.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIT2_9FIRM
hypothetical protein
L3_060_057G1_scaffold_564_29
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24490..26655)
DNA (2166bp) protein (722aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WYW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA05229.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
hypothetical protein
L3_060_057G1_scaffold_564_30
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26685..27539)
DNA (855bp) protein (285aa)
ABC transporter, permease protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FT25_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEG94254.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
ABC transporter
Displaying items 1-30 of 64 in total

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