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L3_060_057G1_scaffold_611

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_611_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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573..1511
DNA (939bp) protein (313aa)
CorA-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRL8_9FIRM
CorA-like protein {ECO:0000313|EMBL:EFB74666.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MIT family metal ion transporter
L3_060_057G1_scaffold_611_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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1625..2185
DNA (561bp) protein (187aa)
Putative RNA polymerase sigma factor (ECF subfamily) n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J0X5_9FIRM
Putative RNA polymerase sigma factor (ECF subfamily) {ECO:0000313|EMBL:CCY42661.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
RNA polymerase sigma-70 factor, ECF subfamily protein
L3_060_057G1_scaffold_611_3
unknown

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2182..2775
DNA (594bp) protein (198aa)

This feature has no annotations

L3_060_057G1_scaffold_611_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2986..4224)
DNA (1239bp) protein (413aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM
L3_060_057G1_scaffold_611_5

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4583..5569
DNA (987bp) protein (329aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEB0_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61664.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L3_060_057G1_scaffold_611_6

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comp(5717..6340)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA9_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61663.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type oligopeptide transport system, periplasmic component
L3_060_057G1_scaffold_611_7

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comp(6382..7167)
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA9_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61663.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type oligopeptide transport system, periplasmic component
L3_060_057G1_scaffold_611_8

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comp(7651..8217)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA8_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61662.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type oligopeptide transport system, periplasmic component
L3_060_057G1_scaffold_611_9

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comp(8417..8872)
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA8_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61662.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type oligopeptide transport system, periplasmic component
L3_060_057G1_scaffold_611_10

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comp(8869..9105)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA8_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61662.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type oligopeptide transport system, periplasmic component
L3_060_057G1_scaffold_611_11

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comp(9434..10423)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA7_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61661.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_060_057G1_scaffold_611_12

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comp(10423..11421)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA6_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61660.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
L3_060_057G1_scaffold_611_13

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comp(11441..12490)
DNA (1050bp) protein (350aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA5_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61659.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_060_057G1_scaffold_611_14

Not on your lists

comp(12505..13422)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA4_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61658.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_060_057G1_scaffold_611_15
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14251..14553
DNA (303bp) protein (101aa)
Transposase (Fragment) n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJA7_9CLOT
Transposase {ECO:0000313|EMBL:EEG28441.1}; Flags: Fragment;; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative transposase
L3_060_057G1_scaffold_611_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15089..15703
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9WVS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ07040.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_060_057G1_scaffold_611_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15969..17078)
DNA (1110bp) protein (370aa)
4Fe-4S binding domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5E5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEU96833.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
aldo/keto reductase
L3_060_057G1_scaffold_611_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17236..19092)
DNA (1857bp) protein (619aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR46_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74893.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L3_060_057G1_scaffold_611_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19070..20821)
DNA (1752bp) protein (584aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR47_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74894.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L3_060_057G1_scaffold_611_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21213..22118)
DNA (906bp) protein (302aa)
Putative membrane protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR48_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EFB74895.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L3_060_057G1_scaffold_611_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22210..22833)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74896.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_060_057G1_scaffold_611_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23036..23599)
DNA (564bp) protein (188aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23491.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_060_057G1_scaffold_611_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24186..25097)
DNA (912bp) protein (304aa)
Ornithine carbamoyltransferase {ECO:0000256|SAAS:SAAS00106174}; EC=2.1.3.3 {ECO:0000256|SAAS:SAAS00106174};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ6_9FIRM
L3_060_057G1_scaffold_611_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25094..26275)
DNA (1182bp) protein (394aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
acetylornithine aminotransferase apoenzyme (EC:2.6.1.17 2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ5_9FIRM
L3_060_057G1_scaffold_611_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26547..27401)
DNA (855bp) protein (285aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ4_9FIRM
L3_060_057G1_scaffold_611_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27593..28732)
DNA (1140bp) protein (380aa)
glutamate N-acetyltransferase/amino-acid acetyltransferase (EC:2.3.1.1 2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ3_9FIRM
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_060_057G1_scaffold_611_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28957..29919)
DNA (963bp) protein (321aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ2_9FIRM
L3_060_057G1_scaffold_611_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30293..31669)
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ1_9FIRM
L3_060_057G1_scaffold_611_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31914..33152)
DNA (1239bp) protein (413aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ0_9FIRM
L3_060_057G1_scaffold_611_30
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33581..34147)
DNA (567bp) protein (189aa)
Hydrolase, NUDIX family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAF8_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:EET62565.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
NUDIX hydrolase
Displaying items 1-30 of 98 in total

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