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L3_060_057G1_scaffold_58

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_58_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_060_057G1_scaffold_58_2
Peptoniphilus sp. 1-1, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(101..394)
DNA (294bp) protein (98aa)
TrpR family protein YerC/YecD n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KYK2_9FIRM
TrpR-like protein YerC/YecD
TrpR-like protein YerC/YecD {ECO:0000313|EMBL:CDZ75003.1}; TaxID=875453 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. 1-1.;"
L3_060_057G1_scaffold_58_3
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(437..2110)
DNA (1674bp) protein (558aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
Formate--tetrahydrofolate ligase n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MS63_9FIRM
formyltetrahydrofolate synthetase
L3_060_057G1_scaffold_58_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2103..2594)
DNA (492bp) protein (164aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MS62_9FIRM
phosphoribosylaminoimidazole carboxylase, catalytic subunit
L3_060_057G1_scaffold_58_5
Peptoniphilus duerdenii, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2666..3973)
DNA (1308bp) protein (436aa)
histidine kinase n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002FFA253
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EFM25140.1}; TaxID=862517 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus duerdenii ATCC BAA-1640.;"
histidine kinase
L3_060_057G1_scaffold_58_6
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3984..4676)
DNA (693bp) protein (231aa)
regulator n=1 Tax=Peptoniphilus rhinitidis RepID=UPI00028990D9
Putative sensory transduction protein RegX3 {ECO:0000313|EMBL:EFR33051.1}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
two-component response regulator
L3_060_057G1_scaffold_58_7
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4807..5718
DNA (912bp) protein (304aa)
ABC transporter, ATP-binding protein n=1 Tax=Finegoldia magna BVS033A4 RepID=E1KWL2_FINMA
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFL54558.1}; TaxID=866773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna BVS033A4.;"
ABC transporter ATP-binding protein
L3_060_057G1_scaffold_58_8
Facklamia hominis, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5711..6466
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Facklamia hominis CCUG 36813 RepID=K1LAH6_9LACT
Uncharacterized protein {ECO:0000313|EMBL:EKB53485.1}; TaxID=883111 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia hominis CCUG 36813.;"
hypothetical protein
L3_060_057G1_scaffold_58_9
Peptoniphilus lacrimalis, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6475..7197
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFA90277.1}; TaxID=596330 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus lacrimalis 315-B.;"
hypothetical protein
L3_060_057G1_scaffold_58_10
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7245..8702)
DNA (1458bp) protein (486aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
guaB; Inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MXE0_9FIRM
L3_060_057G1_scaffold_58_11
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8767..9960)
DNA (1194bp) protein (398aa)
YbbR-like protein n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MXD9_9FIRM
YbbR-like protein {ECO:0000313|EMBL:EGS30982.1}; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
hypothetical protein
L3_060_057G1_scaffold_58_12
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9960..10751)
DNA (792bp) protein (264aa)
TIGR00159 family protein n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MXD8_9FIRM
Membrane protein {ECO:0000313|EMBL:KGF10284.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
protein of hypothetical function DUF147
L3_060_057G1_scaffold_58_13
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(10735..11307)
DNA (573bp) protein (191aa)
Putative uncharacterized protein id=2232965 bin=GWB2_Clostridiales_37_7 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
L3_060_057G1_scaffold_58_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11356..13434)
DNA (2079bp) protein (693aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|SAAS:SAAS00096570};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NMV9_9FIRM
L3_060_057G1_scaffold_58_15
Peptoniphilus sp. oral taxon 386, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13415..14002)
DNA (588bp) protein (196aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=575609 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 386 str. F0131.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI000316DC1E
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase
L3_060_057G1_scaffold_58_16
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13992..14645)
DNA (654bp) protein (218aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Cytidylate kinase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RJW7_9CLOT
cmk; cytidylate kinase
L3_060_057G1_scaffold_58_17
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14646..15857)
DNA (1212bp) protein (404aa)
Flavoprotein family protein n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KXR2_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:EFR33334.1}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
NAD(FAD)-utilizing dehydrogenase
L3_060_057G1_scaffold_58_18
BJP_IG2102_Acholeplasmatales_34_18, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(15858..16406)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Streptococcus marimammalium RepID=UPI0003801994
rRNA methylase
Tax=BJP_IG2102_Acholeplasmatales_34_18
L3_060_057G1_scaffold_58_19
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16406..17116)
DNA (711bp) protein (237aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
Pseudouridine synthase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CW11_HALOH
L3_060_057G1_scaffold_58_20
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17113..17634)
DNA (522bp) protein (174aa)
Segregation and condensation protein B n=1 Tax=Clostridiales bacterium BV3C26 RepID=U7UBK2_9FIRM
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1111134 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3C26.;"
segregation and condensation protein B
L3_060_057G1_scaffold_58_21
Peptoniphilus sp. 1-1, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17612..18355)
DNA (744bp) protein (248aa)
cell division protein ScpA n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0003081A1A
Segregation and condensation protein A
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=875453 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. 1-1.;"
L3_060_057G1_scaffold_58_22
Peptoniphilus sp. 1-1, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18352..18960)
DNA (609bp) protein (203aa)
Peptidase, M50 family n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N7B1_9FIRM
peptidase, M50 family
Peptidase, M50 family {ECO:0000313|EMBL:CDZ74455.1}; TaxID=875453 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. 1-1.;"
L3_060_057G1_scaffold_58_23
Peptoniphilus sp. oral taxon 386, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18950..20260)
DNA (1311bp) protein (437aa)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EFI42061.1}; EC=2.4.2.2 {ECO:0000313|EMBL:EFI42061.1};; TaxID=575609 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 386 str. F0131.;"
Pyrimidine-nucleoside phosphorylase n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N7B0_9FIRM
pyrimidine nucleoside phosphorylase
L3_060_057G1_scaffold_58_24
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20262..21059)
DNA (798bp) protein (266aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29427.;"
Purine nucleoside phosphorylase n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D6N7_9FIRM
deoD1; purine nucleoside phosphorylase I, inosine and guanosine-specific
L3_060_057G1_scaffold_58_25
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21043..21594)
DNA (552bp) protein (184aa)
ADP-ribose pyrophosphatase n=1 Tax=Peptoniphilus rhinitidis RepID=UPI00028851E4
Hydrolase, NUDIX family {ECO:0000313|EMBL:EGS30672.1}; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
NUDIX hydrolase
L3_060_057G1_scaffold_58_26
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21603..23258)
DNA (1656bp) protein (552aa)
DNA repair protein RecN n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KXS1_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
DNA repair protein RecN
L3_060_057G1_scaffold_58_27
Peptoniphilus lacrimalis, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23260..24054)
DNA (795bp) protein (265aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:EFA90521.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFA90521.1};; TaxID=596330 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus lacrimalis 315-B.;"
yqxC; putative rRNA methyltransferase (EC:2.1.1.-)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSJ2_9FIRM
L3_060_057G1_scaffold_58_28
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24059..24835)
DNA (777bp) protein (259aa)
Polyprenyl synthetase n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MEW0_9FIRM
Polyprenyl synthetase {ECO:0000313|EMBL:EFV02398.1}; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
polyprenyl synthetase
L3_060_057G1_scaffold_58_29
Filifactor alocis, Filifactor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24825..25028)
DNA (204bp) protein (68aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=546269 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Filifactor.;" source="Filifactor alocis (strain ATCC 35896 / D40 B5) (Fusobacterium alocis).;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GSF4_FILAD
exodeoxyribonuclease VII small subunit
L3_060_057G1_scaffold_58_30
Listeria grandensis, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25018..26349)
DNA (1332bp) protein (444aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1265819 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria grandensis FSL F6-971.;"
UPI0003D61359 related cluster n=1 Tax=unknown RepID=UPI0003D61359
exodeoxyribonuclease VII large subunit
Displaying items 1-30 of 135 in total

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