ggKbase home page

L3_060_057G1_scaffold_82

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_82_1
Peptoniphilus duerdenii, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(140..739)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Peptoniphilus sp. BV3AC2 RepID=U7UUB3_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=862517 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus duerdenii ATCC BAA-1640.;"
recR; Recombination protein RecR
L3_060_057G1_scaffold_82_2
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(742..1080)
DNA (339bp) protein (113aa)
Nucleoid-associated protein CcarbDRAFT_3997 n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PYY0_9CLOT
hypothetical protein
Nucleoid-associated protein U732_4195 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
L3_060_057G1_scaffold_82_3
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1090..2700)
DNA (1611bp) protein (537aa)
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EGS30289.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EGS30289.1};; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
DNA polymerase III, subunit gamma and tau n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MSV0_9FIRM
DNA polymerase III, gamma and tau subunits
L3_060_057G1_scaffold_82_4
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2873..3148
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D4W6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGY79414.1}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29427.;"
circumsporozoite protein
L3_060_057G1_scaffold_82_5
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3284..5038
DNA (1755bp) protein (585aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridiales bacterium BV3C26 RepID=U7UFK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERT58116.1}; Flags: Fragment;; TaxID=1111134 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3C26.;"
hypothetical protein
L3_060_057G1_scaffold_82_6
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5163..6479
DNA (1317bp) protein (439aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
Aspartokinase n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MV90_9FIRM
aspartate kinase
L3_060_057G1_scaffold_82_7
Leptotrichia sp. oral taxon 879, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

6641..6937
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Leptotrichia sp. oral taxon 879 str. F0557 RepID=U2R319_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:ERK48018.1}; TaxID=1227268 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia sp. oral taxon 879 str. F0557.;"
hypothetical protein
L3_060_057G1_scaffold_82_8
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

6912..7676
DNA (765bp) protein (255aa)
nitrate ABC transporter permease n=1 Tax=Blautia producta RepID=UPI00037713DC
Uncharacterized protein {ECO:0000313|EMBL:CDC42458.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
binding-protein-dependent transport systems inner membrane component
L3_060_057G1_scaffold_82_9
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7686..8684
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K1W8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE69803.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
NMT1/THI5 like domain-containing protein
L3_060_057G1_scaffold_82_10
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8665..9417
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6JLP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB50932.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
L3_060_057G1_scaffold_82_11
unknown

Not on your lists

comp(9565..10746)
DNA (1182bp) protein (394aa)

This feature has no annotations

L3_060_057G1_scaffold_82_12
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10825..11889)
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Brevibacillus laterosporus LMG 15441 RepID=F7U1E8_BRELA
peptidase C39 like family protein
Peptidase C39 like family protein {ECO:0000313|EMBL:AIG25891.1}; TaxID=1042163 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus LMG 15441.;"
L3_060_057G1_scaffold_82_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12411..13991)
DNA (1581bp) protein (527aa)
Putative uncharacterized protein n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MWI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF07182.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
sortase
L3_060_057G1_scaffold_82_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14326..15663)
DNA (1338bp) protein (446aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W3W3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF11333.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
L3_060_057G1_scaffold_82_15
Peptoniphilus sp. oral taxon 386, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15739..16683)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N5H0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFI42133.1}; TaxID=575609 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 386 str. F0131.;"
S-layer homology domain protein
L3_060_057G1_scaffold_82_16
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16680..17822)
DNA (1143bp) protein (381aa)
Bacterial capsule synthesis protein n=1 Tax=Finegoldia magna BVS033A4 RepID=E1KV88_FINMA
Bacterial capsule synthesis protein {ECO:0000313|EMBL:EFL55026.1}; TaxID=866773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna BVS033A4.;"
hypothetical protein
L3_060_057G1_scaffold_82_17
Peptoniphilus sp. oral taxon 386, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18267..19022)
DNA (756bp) protein (252aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=575609 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 386 str. F0131.;"
transcriptional regulator n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002FD218F
NGG1p interacting factor 3 protein, NIF3
L3_060_057G1_scaffold_82_18
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18997..19665)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XJL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06527.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Predicted SAM-dependent methyltransferase
L3_060_057G1_scaffold_82_19
Peptoniphilus sp. BV3AC2, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19662..20774)
DNA (1113bp) protein (371aa)
RNA polymerase sigma factor SigA n=1 Tax=Peptoniphilus sp. BV3AC2 RepID=U7V151_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1111133 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3AC2.;"
sigA; RNA polymerase sigma factor RpoD
L3_060_057G1_scaffold_82_20
Peptoniphilus sp. oral taxon 386, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20771..22543)
DNA (1773bp) protein (591aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=575609 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 386 str. F0131.;"
DNA primase n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N661_9FIRM
DNA primase
L3_060_057G1_scaffold_82_21
Peptoniphilus lacrimalis, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22559..23584)
DNA (1026bp) protein (342aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Peptoniphilus sp. oral taxon 836 str. F0141 RepID=D8FI45_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1401070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus lacrimalis DNF00528.;"
deoxyguanosinetriphosphate triphosphohydrolase-like protein
L3_060_057G1_scaffold_82_22
Peptoniphilus lacrimalis, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23593..24426)
DNA (834bp) protein (278aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1401070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus lacrimalis DNF00528.;"
putative pyruvate, phosphate dikinase regulatory protein (EC:2.7.11.32)
Putative pyruvate, phosphate dikinase regulatory protein n=2 Tax=Peptoniphilus RepID=D1VTG2_9FIRM
L3_060_057G1_scaffold_82_23
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24416..25039)
DNA (624bp) protein (208aa)
Putative signal transduction protein with CBS domains n=1 Tax=Thermincola potens (strain JR) RepID=D5XAN7_THEPJ
putative signal transduction protein with CBS domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ADG83241.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
L3_060_057G1_scaffold_82_24
Peptoniphilus sp. 1-1, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25047..27140)
DNA (2094bp) protein (698aa)
glyS; Glycine-tRNA ligase beta subunit (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=875453 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. 1-1.;"
Glycine--tRNA ligase, beta subunit n=1 Tax=Clostridiales bacterium BV3C26 RepID=U7USB7_9FIRM
L3_060_057G1_scaffold_82_25
Peptoniphilus sp. oral taxon 375, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27133..28020)
DNA (888bp) protein (296aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=879308 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. oral taxon 375 str. F0436.;"
glyQ; Glycine-tRNA ligase alpha subunit (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MS52_9FIRM
L3_060_057G1_scaffold_82_26
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28034..28744)
DNA (711bp) protein (237aa)
DNA repair protein RecO n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4L090_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
DNA repair protein RecO
L3_060_057G1_scaffold_82_27
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28725..29621)
DNA (897bp) protein (299aa)
GTPase Era n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MS50_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
era; GTPase Era
L3_060_057G1_scaffold_82_28
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29614..30030)
DNA (417bp) protein (139aa)
Cytidine deaminase {ECO:0000313|EMBL:CCQ97376.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CCQ97376.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
cdd; cytidine deaminase Cdd (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Clostridium ultunense Esp RepID=M1ZF85_9CLOT
L3_060_057G1_scaffold_82_29
Peptoniphilus sp. 1-1, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30032..30658)
DNA (627bp) protein (209aa)
Prokaryotic diacylglycerol kinase n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4L093_9FIRM
diacylglycerol kinase
Diacylglycerol kinase {ECO:0000313|EMBL:CDZ75114.1}; TaxID=875453 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. 1-1.;"
L3_060_057G1_scaffold_82_30
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30723..31187)
DNA (465bp) protein (155aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
heat-shock protein n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002ECE18F
putative metalloprotease
Displaying items 1-30 of 101 in total

View Taxonomy