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L3_060_144G1_scaffold_26

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_144G1_scaffold_26_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(460..657)
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=C0FRH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94822.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L3_060_144G1_scaffold_26_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(739..1287)
DNA (549bp) protein (183aa)
Multimeric flavodoxin WrbA n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7I6_9FIRM
Multimeric flavodoxin WrbA
Multimeric flavodoxin WrbA {ECO:0000313|EMBL:CBL15581.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_060_144G1_scaffold_26_3
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1867..2580)
DNA (714bp) protein (238aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC:2.3.1.51)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WR61_9FIRM
L3_060_144G1_scaffold_26_4
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2594..3145)
DNA (552bp) protein (184aa)
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2Z2_9CLOT
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EEG73503.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta
L3_060_144G1_scaffold_26_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3192..4034)
DNA (843bp) protein (281aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.2)
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type n=4 Tax=Clostridiales RepID=A7AZZ0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN44391.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_060_144G1_scaffold_26_6
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4046..5518)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D507_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75330.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L3_060_144G1_scaffold_26_7
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5508..5732)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A804_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ22568.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
yozG; YozG family transcription regulator
L3_060_144G1_scaffold_26_8
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5747..6211)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NH68_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS06078.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L3_060_144G1_scaffold_26_9
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6373..6852
DNA (480bp) protein (160aa)
C_GCAxxG_C_C family protein n=1 Tax=Dorea sp. 5-2 RepID=R9MMF0_9FIRM
C_GCAxxG_C_C family protein {ECO:0000313|EMBL:EOS72279.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
C-GCAxxG-C-C, Putative redox-active protein (C-GCAxxG-C-C)
L3_060_144G1_scaffold_26_10
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6857..7975
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI0002ED7AC0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ57867.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
L3_060_144G1_scaffold_26_11
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8050..10704)
DNA (2655bp) protein (885aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NED8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS81291.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_060_144G1_scaffold_26_12
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10704..11384)
DNA (681bp) protein (227aa)
ABC transporter, ATP-binding protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LE24_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EET61227.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ABC transporter-like protein
L3_060_144G1_scaffold_26_13
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11465..12484)
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LE22_9FIRM
periplasmic sensor signal transduction histidine kinase
L3_060_144G1_scaffold_26_14
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12490..13167)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NDW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS81288.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
two component transcriptional regulator
L3_060_144G1_scaffold_26_15
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13409..14725
DNA (1317bp) protein (439aa)
MATE efflux family protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LF79_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EET60818.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
putative efflux protein, MATE family
L3_060_144G1_scaffold_26_16
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14774..15313)
DNA (540bp) protein (180aa)
ParB-like protein n=5 Tax=Firmicutes RepID=E4LRD9_9CLOT
ParB-like protein {ECO:0000313|EMBL:EFR38640.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
immunoglobulin-binding regulator B
L3_060_144G1_scaffold_26_17
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15306..16652)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VWB2_9FIRM
Co-activator of prophage gene expression IbrA
Uncharacterized protein {ECO:0000313|EMBL:ENY84195.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_060_144G1_scaffold_26_18
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16896..19388)
DNA (2493bp) protein (831aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YIE4_9FIRM
L3_060_144G1_scaffold_26_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19405..21318)
DNA (1914bp) protein (638aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=4 Tax=Clostridiales RepID=A7AZZ3_RUMGN
L3_060_144G1_scaffold_26_20
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21332..22417)
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=2 Tax=Lachnospiraceae RepID=R6EB17_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
recF protein
L3_060_144G1_scaffold_26_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22432..22641)
DNA (210bp) protein (70aa)
S4 domain protein n=2 Tax=Clostridium RepID=B6FQG3_9CLOT
S4 domain protein {ECO:0000313|EMBL:EEA81703.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_060_144G1_scaffold_26_22
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22658..23764)
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=3 Tax=Lachnospiraceae RepID=F3APG3_9FIRM
L3_060_144G1_scaffold_26_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23944..25353)
DNA (1410bp) protein (470aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Clostridium RepID=B6FQG1_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
chromosomal replication initiator protein DnaA
L3_060_144G1_scaffold_26_24
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25917..26051
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCB5_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
LSU ribosomal protein L34P
L3_060_144G1_scaffold_26_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26139..26522
DNA (384bp) protein (128aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=4 Tax=Clostridiales RepID=A7B000_RUMGN
L3_060_144G1_scaffold_26_26
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26519..26734
DNA (216bp) protein (72aa)
Putative membrane protein insertion efficiency factor n=4 Tax=Lachnospiraceae RepID=E9RYD8_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
hypothetical protein
L3_060_144G1_scaffold_26_27
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26766..28049
DNA (1284bp) protein (428aa)
YidC/Oxa1 family membrane protein insertase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCB2_9FIRM
YidC/Oxa1 family membrane protein insertase {ECO:0000313|EMBL:EGG81880.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_060_144G1_scaffold_26_28
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28071..28955
DNA (885bp) protein (295aa)
SpoIIIJ-associated protein n=1 Tax=Dorea sp. 5-2 RepID=R9MJY6_9FIRM
SpoIIIJ-associated protein {ECO:0000313|EMBL:EOS71414.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Predicted RNA-binding protein
L3_060_144G1_scaffold_26_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29026..30399
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQF4_9CLOT
tRNA modification GTPase trmE
L3_060_144G1_scaffold_26_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30365..32266
DNA (1902bp) protein (634aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=2 Tax=Clostridium RepID=B6FQF3_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glucose-inhibited division protein A
Displaying items 1-30 of 150 in total

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