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L3_060_144G1_scaffold_369

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_144G1_scaffold_369_1
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..742
DNA (741bp) protein (247aa)
RHS repeat-associated core domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CBG9_9CLOT
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EFE13051.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Rhs family protein
L3_060_144G1_scaffold_369_2
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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758..1090
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4CBH0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK78742.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_060_144G1_scaffold_369_3
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1188..1475
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KDL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS41567.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein
L3_060_144G1_scaffold_369_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1627..1959
DNA (333bp) protein (111aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C113_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD21078.1}; Flags: Fragment;; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_060_144G1_scaffold_369_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1952..2200
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74874.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_060_144G1_scaffold_369_6
Paenibacillus popilliae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2521..2901
DNA (381bp) protein (127aa)
Outer membrane protein n=1 Tax=Paenibacillus popilliae ATCC 14706 RepID=M9LDK4_PAEPP
Outer membrane protein {ECO:0000313|EMBL:GAC44482.1}; TaxID=1212764 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus popilliae ATCC 14706.;"
L3_060_144G1_scaffold_369_7
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3048..3293
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KKP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62717.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
L3_060_144G1_scaffold_369_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4143..4622)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZNI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44939.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_369_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4988..8842
DNA (3855bp) protein (1285aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZH05_9CLOT
L3_060_144G1_scaffold_369_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8861..12526
DNA (3666bp) protein (1222aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z232_9CLOT
L3_060_144G1_scaffold_369_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12745..13683)
DNA (939bp) protein (313aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9Q2_9CLOT
L3_060_144G1_scaffold_369_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14043..15299
DNA (1257bp) protein (419aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Putative N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YW31_9CLOT
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDD40253.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_060_144G1_scaffold_369_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15437..16420
DNA (984bp) protein (328aa)
Spore coat protein CotS family n=1 Tax=Clostridium sp. CAG:299 RepID=R7AC15_9CLOT
Spore coat protein CotS family {ECO:0000313|EMBL:CDD40252.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
CotS family spore coat protein
L3_060_144G1_scaffold_369_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16541..18277
DNA (1737bp) protein (579aa)
alpha-phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
Alpha-phosphoglucomutase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YW27_9CLOT
Alpha-phosphoglucomutase {ECO:0000313|EMBL:CDD40248.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_060_144G1_scaffold_369_15
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18614..19102
DNA (489bp) protein (163aa)
50S ribosomal protein L10 n=4 Tax=Clostridiales RepID=D4MSM2_9FIRM
LSU ribosomal protein L10P
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_060_144G1_scaffold_369_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19232..19606
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9N6_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
LSU ribosomal protein L12P
L3_060_144G1_scaffold_369_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19730..20518
DNA (789bp) protein (263aa)
Nitroreductase family protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AC08_9CLOT
Nitroreductase family protein {ECO:0000313|EMBL:CDD40242.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
nitroreductase family protein
L3_060_144G1_scaffold_369_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20633..21337
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z222_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40240.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_369_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21525..22199
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YW18_9CLOT
L3_060_144G1_scaffold_369_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22214..23059
DNA (846bp) protein (282aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Clostridium sp. CAG:299 RepID=R7AC04_9CLOT
L3_060_144G1_scaffold_369_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23201..23971
DNA (771bp) protein (257aa)
Polysaccharide deacetylase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z217_9CLOT
Polysaccharide deacetylase {ECO:0000313|EMBL:CDD40235.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
polysaccharide deacetylase
L3_060_144G1_scaffold_369_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24003..25328
DNA (1326bp) protein (442aa)
ATPase related to the helicase subunit of the Holliday junction resolvase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YW14_9CLOT
ATPase related to the helicase subunit of the Holliday junction resolvase {ECO:0000313|EMBL:CDD40233.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ATPase related to the helicase subunit of the Holliday junction resolvase
L3_060_144G1_scaffold_369_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25583..26185
DNA (603bp) protein (201aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:299 RepID=R7AC01_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RNA polymerase ECF-type sigma factor
L3_060_144G1_scaffold_369_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26145..26984
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z212_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40230.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_369_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27111..27797)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YW09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40228.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_060_144G1_scaffold_369_26
unknown

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27923..28144
DNA (222bp) protein (74aa)

This feature has no annotations

L3_060_144G1_scaffold_369_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28268..29641
DNA (1374bp) protein (458aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZGX1_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD40226.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_060_144G1_scaffold_369_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29592..30422
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9L3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40224.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_369_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30426..33659
DNA (3234bp) protein (1078aa)
Predicted glycosyltransferases n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZGW5_9CLOT
Predicted glycosyltransferases {ECO:0000313|EMBL:CDD40221.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted glycosyltransferases
L3_060_144G1_scaffold_369_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33656..34408
DNA (753bp) protein (251aa)
Protein TraX n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9K8_9CLOT
Protein TraX {ECO:0000313|EMBL:CDD40219.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
TraX protein.
Displaying items 1-30 of 42 in total

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