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L3_060_144G1_scaffold_743

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_144G1_scaffold_743_1
unknown

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3..182
DNA (180bp) protein (60aa)

This feature has no annotations

L3_060_144G1_scaffold_743_2
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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606..1007
DNA (402bp) protein (134aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U369_ETHHY
ArsC family transcriptional regulator {ECO:0000313|EMBL:KEZ86889.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
protein-tyrosine phosphatase
L3_060_144G1_scaffold_743_3
unknown

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comp(1071..1274)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_060_144G1_scaffold_743_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1274..2164)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AG23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41507.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_743_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2243..2743)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZDH5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41509.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_743_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2769..3890)
DNA (1122bp) protein (374aa)
ParB-like partition proteins n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZKM6_9CLOT
ParB-like partition proteins {ECO:0000313|EMBL:CDD41511.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ParB-like partition proteins
L3_060_144G1_scaffold_743_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3894..4661)
DNA (768bp) protein (256aa)
ATPases involved in chromosome partitioning n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZP2_9CLOT
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CDD41513.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ATPases involved in chromosome partitioning
L3_060_144G1_scaffold_743_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5647..6597
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5P0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41515.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_743_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6736..7521)
DNA (786bp) protein (262aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.-.- 2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium sp. CAG:299 RepID=R7AG31_9CLOT
L3_060_144G1_scaffold_743_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7631..9517)
DNA (1887bp) protein (629aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZP6_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
glucose-inhibited division protein A
L3_060_144G1_scaffold_743_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9806..11191)
DNA (1386bp) protein (462aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZDI5_9CLOT
tRNA modification GTPase trmE
L3_060_144G1_scaffold_743_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11390..12040)
DNA (651bp) protein (217aa)
Predicted RNA-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AG36_9CLOT
Predicted RNA-binding protein {ECO:0000313|EMBL:CDD41522.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted RNA-binding protein
L3_060_144G1_scaffold_743_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12053..13300)
DNA (1248bp) protein (416aa)
Membrane protein insertase YidC/Oxa1 family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZDI9_9CLOT
Membrane protein insertase YidC/Oxa1 family {ECO:0000313|EMBL:CDD41524.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_060_144G1_scaffold_743_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13528..13884)
DNA (357bp) protein (119aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZQ7_9CLOT
L3_060_144G1_scaffold_743_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13992..14126)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=5 Tax=Clostridiales RepID=D4MRD2_9FIRM
LSU ribosomal protein L34P
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_060_144G1_scaffold_743_16
unknown

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comp(14385..14558)
DNA (174bp) protein (58aa)

This feature has no annotations

L3_060_144G1_scaffold_743_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14675..16045
DNA (1371bp) protein (457aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZKN9_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
chromosomal replication initiator protein DnaA
L3_060_144G1_scaffold_743_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16332..17450
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Clostridium sp. CAG:299 RepID=R7AG45_9CLOT
L3_060_144G1_scaffold_743_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17525..17782
DNA (258bp) protein (86aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZDJ6_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD41534.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_060_144G1_scaffold_743_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17798..18883
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZKP1_9CLOT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA replication and repair protein RecF
L3_060_144G1_scaffold_743_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18897..20807
DNA (1911bp) protein (637aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZR6_9CLOT
L3_060_144G1_scaffold_743_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20847..23387
DNA (2541bp) protein (847aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZDK0_9CLOT
L3_060_144G1_scaffold_743_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23535..24377
DNA (843bp) protein (281aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.2)
Hydrolyase tartrate alpha subunit/fumarate domain protein Fe-S type n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5R6_9CLOT
Hydrolyase tartrate alpha subunit/fumarate domain protein Fe-S type {ECO:0000313|EMBL:CDD41540.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_060_144G1_scaffold_743_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24575..25129
DNA (555bp) protein (185aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Hydro-lyases Fe-S type tartrate/fumarate subfamily beta region n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZKP6_9CLOT
Hydro-lyases Fe-S type tartrate/fumarate subfamily beta region {ECO:0000313|EMBL:CDD41541.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Displaying 24 items

View Taxonomy