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L3_060_144G1_scaffold_1221

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Displaying 12 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_144G1_scaffold_1221_1
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(295..651)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=4 Tax=Clostridium RepID=D6DKE8_CLOSC
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_060_144G1_scaffold_1221_2
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(683..880)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=5 Tax=Clostridiales RepID=D4MQE3_9FIRM
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_060_144G1_scaffold_1221_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(913..1371)
DNA (459bp) protein (153aa)
Translation initiation factor IF-3 n=1 Tax=Clostridium sp. CAG:299 RepID=R7ART6_9CLOT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
bacterial translation initiation factor 3 (bIF-3)
L3_060_144G1_scaffold_1221_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1870..2184)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHM2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD45605.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Domain of Unknown Function (DUF1540).
L3_060_144G1_scaffold_1221_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2323..4257)
DNA (1935bp) protein (645aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZX00_9CLOT
L3_060_144G1_scaffold_1221_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4714..5784)
DNA (1071bp) protein (357aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R7AVZ0_9CLOT
L3_060_144G1_scaffold_1221_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5890..7266)
DNA (1377bp) protein (459aa)
MATE efflux family protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZB66_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CDD45608.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
putative efflux protein, MATE family
L3_060_144G1_scaffold_1221_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7986..8450)
DNA (465bp) protein (155aa)
SsrA-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZX06_9CLOT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SsrA-binding protein
L3_060_144G1_scaffold_1221_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8482..10662)
DNA (2181bp) protein (727aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Ribonuclease R n=1 Tax=Clostridium sp. CAG:299 RepID=R7AUQ1_9CLOT
ribonuclease R
L3_060_144G1_scaffold_1221_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10895..11131)
DNA (237bp) protein (79aa)
Protein translocase SecG subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZB71_9CLOT
Protein translocase SecG subunit {ECO:0000313|EMBL:CDD45613.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
protein translocase, SecG subunit
L3_060_144G1_scaffold_1221_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11160..11327)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z4C2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41030.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_060_144G1_scaffold_1221_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11406..14750)
DNA (3345bp) protein (1115aa)
Type I site-specific restriction-modification system, R (restriction) subunit and related helicases (EC:3.1.21.3)
Type I restriction-modification system R subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZJ82_9CLOT
Type I restriction-modification system R subunit {ECO:0000313|EMBL:CDD41026.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Displaying 12 items

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