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L3_060_144G1_scaffold_1472

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_144G1_scaffold_1472_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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146..3640
DNA (3495bp) protein (1165aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000368F6F4
putative beta-galactosidase
L3_060_144G1_scaffold_1472_2
unknown

Not on your lists

3667..3795
DNA (129bp) protein (43aa)

This feature has no annotations

L3_060_144G1_scaffold_1472_3
unknown

Not on your lists

3849..4277
DNA (429bp) protein (143aa)

This feature has no annotations

L3_060_144G1_scaffold_1472_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4255..10290
DNA (6036bp) protein (2012aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FIY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG00624.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
endo-alpha-N-acetylgalactosaminidase
L3_060_144G1_scaffold_1472_5
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10364..10831)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LJM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET59146.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_060_144G1_scaffold_1472_6
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10834..11994)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LJM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET59146.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_060_144G1_scaffold_1472_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12196..13104
DNA (909bp) protein (303aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PRV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23474.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L3_060_144G1_scaffold_1472_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13124..14014
DNA (891bp) protein (297aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Clostridium RepID=B6FUP0_9CLOT
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EEA80264.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
L3_060_144G1_scaffold_1472_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14007..14879
DNA (873bp) protein (291aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23476.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L3_060_144G1_scaffold_1472_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14866..15615
DNA (750bp) protein (250aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FUN8_9CLOT
L3_060_144G1_scaffold_1472_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15617..16273
DNA (657bp) protein (219aa)
Phosphate-specific transport system accessory protein PhoU n=2 Tax=Clostridium RepID=B6FUN7_9CLOT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphate uptake regulator, PhoU
L3_060_144G1_scaffold_1472_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16298..16423
DNA (126bp) protein (42aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FUN6_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA80260.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_060_144G1_scaffold_1472_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16468..16917
DNA (450bp) protein (150aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FUN6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23479.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_060_144G1_scaffold_1472_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16907..18238
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PIW8_9CLOT
L3_060_144G1_scaffold_1472_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18477..18635)
DNA (159bp) protein (53aa)
Rubredoxin n=2 Tax=Clostridium RepID=B6FUN2_9CLOT
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
rubredoxin-type Fe(Cys)4 protein
L3_060_144G1_scaffold_1472_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18828..19577
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PRW1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23484.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted xylanase/chitin deacetylase
L3_060_144G1_scaffold_1472_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19711..20964
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PIX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23485.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glutamine synthetase, type I
L3_060_144G1_scaffold_1472_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21008..21556
DNA (549bp) protein (183aa)
ANTAR domain protein n=2 Tax=Clostridium RepID=B6FUM9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23486.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulator with putative antiterminator output domain
L3_060_144G1_scaffold_1472_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21577..22410
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=2 Tax=Clostridium RepID=B6FUM8_9CLOT
L3_060_144G1_scaffold_1472_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22427..23641
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=2 Tax=Clostridium RepID=B6FUM7_9CLOT
L3_060_144G1_scaffold_1472_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23690..24373)
DNA (684bp) protein (228aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Clostridium RepID=B6FUM6_9CLOT
phosphoribosylaminoimidazole-succinocarboxamide synthase
L3_060_144G1_scaffold_1472_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24527..25318)
DNA (792bp) protein (264aa)
Transcriptional regulator, MerR family n=2 Tax=Clostridium RepID=B6FUM5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23490.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
regulatory protein MerR
L3_060_144G1_scaffold_1472_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25434..25907)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23491.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_060_144G1_scaffold_1472_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26442..27098
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QNH2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23492.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_060_144G1_scaffold_1472_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27115..28092
DNA (978bp) protein (326aa)
xynB; Endo-1,4-beta-xylanase B (EC:3.2.1.8)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUL4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80283.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_060_144G1_scaffold_1472_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28105..29115
DNA (1011bp) protein (337aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUL3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80282.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_060_144G1_scaffold_1472_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29150..29650)
DNA (501bp) protein (167aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium RepID=B6FUL2_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEA80281.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
C_GCAxxG_C_C family protein
L3_060_144G1_scaffold_1472_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29818..30522
DNA (705bp) protein (235aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FUL1_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA80280.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_060_144G1_scaffold_1472_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30529..33774
DNA (3246bp) protein (1082aa)
Efflux ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUL0_9CLOT
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEA80279.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted permease.
L3_060_144G1_scaffold_1472_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33932..35992
DNA (2061bp) protein (687aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUK9_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EEA80278.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Molecular chaperone, HSP90 family
Displaying items 1-30 of 32 in total

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