ggKbase home page

L3_060_256G1_scaffold_2309

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_2309_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..417)
DNA (417bp) protein (139aa)
Resolvase, N-terminal domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SH92_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDP20495.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_060_256G1_scaffold_2309_2
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(637..999)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CC87_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE12833.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_060_256G1_scaffold_2309_3
Bacillus sp. TS-2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1042..3546)
DNA (2505bp) protein (835aa)
hypothetical protein n=1 Tax=Amphibacillus jilinensis RepID=UPI0002D58664
ABC transporter permease protein {ECO:0000313|EMBL:GAF64455.1}; TaxID=1450694 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. TS-2.;"
cell division protein FtsX
L3_060_256G1_scaffold_2309_4
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3546..4226)
DNA (681bp) protein (227aa)
ABC transporter related protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JZK5_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:CDE69440.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
ABC transporter-like protein
L3_060_256G1_scaffold_2309_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4327..5334)
DNA (1008bp) protein (336aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Integral membrane sensor signal transduction histidine kinase n=7 Tax=Clostridium thermocellum RepID=A3DCU5_CLOTH
integral membrane sensor signal transduction histidine kinase
L3_060_256G1_scaffold_2309_6
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5336..6004)
DNA (669bp) protein (223aa)
transcriptional regulator n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37954
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABN51773.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_060_256G1_scaffold_2309_7
Firmicutes bacterium M10-2, Firmicutes, Bacteria

Not on your lists

comp(6001..6213)
DNA (213bp) protein (71aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Firmicutes bacterium M10-2 RepID=R9LVA1_9FIRM
transposase and inactivated derivatives
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EOS59652.1}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
L3_060_256G1_scaffold_2309_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6615..7175
DNA (561bp) protein (187aa)
RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=E5XG73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26000.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative RNA polymerase sigma factor (ECF subfamily) protein
L3_060_256G1_scaffold_2309_9
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7172..7840
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z7L6_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73294.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_060_256G1_scaffold_2309_10
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7974..9671)
DNA (1698bp) protein (566aa)
MobA/MobL family protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAS5_9FIRM
MobA/MobL family protein {ECO:0000313|EMBL:EDS71372.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
hypothetical protein
L3_060_256G1_scaffold_2309_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10073..10279)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D786_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI75386.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
relaxasome subunit MobC
L3_060_256G1_scaffold_2309_12
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10465..10839)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS71375.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
hypothetical protein
L3_060_256G1_scaffold_2309_13
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10836..11504)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LTJ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61838.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
plasmid segregation actin-type ATPase ParM
L3_060_256G1_scaffold_2309_14
unknown

Not on your lists

11536..11775
DNA (240bp) protein (80aa)

This feature has no annotations

L3_060_256G1_scaffold_2309_15
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11993..13318)
DNA (1326bp) protein (442aa)
Phage/plasmid primase, P4 family domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6B0_9CLOT
Phage/plasmid primase, P4 family domain protein {ECO:0000313|EMBL:EFE14098.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
phage/plasmid primase
L3_060_256G1_scaffold_2309_16
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13281..13916)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CHY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO30190.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
DNA primase
L3_060_256G1_scaffold_2309_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14000..16048)
DNA (2049bp) protein (683aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=U5FB74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67720.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_060_256G1_scaffold_2309_18
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16045..16254)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09797.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_060_256G1_scaffold_2309_19
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16505..17383
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C6A6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14094.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_060_256G1_scaffold_2309_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17431..18357
DNA (927bp) protein (309aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=U5FBA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67723.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_060_256G1_scaffold_2309_21
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18350..19717
DNA (1368bp) protein (456aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen {ECO:0000313|EMBL:CBK77394.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBK77394.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DI70_CLOSC
L3_060_256G1_scaffold_2309_22
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19778..20149)
DNA (372bp) protein (124aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=U5FB78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67725.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_060_256G1_scaffold_2309_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20245..20448)
DNA (204bp) protein (68aa)
Resolvase, N-terminal domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SH92_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDP21891.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
site-specific recombinase, DNA invertase Pin
Displaying 23 items

View Taxonomy