ggKbase home page

L3_060_256G1_scaffold_1133

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_1133_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..625
DNA (624bp) protein (208aa)
Phage integrase family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JXZ5_9FIRM
Phage integrase family.
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDP22263.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_060_256G1_scaffold_1133_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

710..1285
DNA (576bp) protein (192aa)
Site-specific recombinase, phage integrase family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8V3_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDP22125.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Phage integrase family.
L3_060_256G1_scaffold_1133_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1507..2988)
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95151.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_060_256G1_scaffold_1133_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3394..4440)
DNA (1047bp) protein (349aa)
Tat pathway signal sequence domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHT6_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFQ07264.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_060_256G1_scaffold_1133_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4508..6031)
DNA (1524bp) protein (508aa)
Membrane protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHT5_9FIRM
Membrane protein {ECO:0000313|EMBL:EFQ07263.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_060_256G1_scaffold_1133_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6050..6586)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07262.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_060_256G1_scaffold_1133_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6639..7625)
DNA (987bp) protein (329aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFQ07261.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFQ07261.1};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHT3_9FIRM
L3_060_256G1_scaffold_1133_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7638..8711)
DNA (1074bp) protein (358aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHT2_9FIRM
L3_060_256G1_scaffold_1133_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8736..9644)
DNA (909bp) protein (303aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHT1_9FIRM
dihydrodipicolinate synthase
L3_060_256G1_scaffold_1133_10
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9689..10843)
DNA (1155bp) protein (385aa)
Alcohol dehydrogenase, class IV n=3 Tax=Clostridiales RepID=D4MSX5_9FIRM
Alcohol dehydrogenase, class IV
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:CBL36861.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_060_256G1_scaffold_1133_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10867..12243)
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07274.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_060_256G1_scaffold_1133_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12435..14210
DNA (1776bp) protein (592aa)
Transcriptional regulator, Fis family n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHS7_9FIRM
Transcriptional regulator, Fis family {ECO:0000313|EMBL:EFQ07273.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L3_060_256G1_scaffold_1133_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14999..15433
DNA (435bp) protein (145aa)
Bacterial mobilization protein MobC n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHS5_9FIRM
Bacterial mobilization protein MobC {ECO:0000313|EMBL:EFQ07271.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Bacterial mobilisation protein (MobC).
L3_060_256G1_scaffold_1133_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15405..16940
DNA (1536bp) protein (512aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHS4_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EFQ07270.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Relaxase/Mobilisation nuclease domain.
L3_060_256G1_scaffold_1133_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16953..17837
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07269.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_060_256G1_scaffold_1133_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17990..18274
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HAE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95122.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_060_256G1_scaffold_1133_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18263..18514)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8A2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95862.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_060_256G1_scaffold_1133_18
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19087..19992
DNA (906bp) protein (302aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
Phage-like lysozyme n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVX1_CLOSA
hypothetical protein
L3_060_256G1_scaffold_1133_19
unknown

Not on your lists

comp(20136..20912)
DNA (777bp) protein (259aa)

This feature has no annotations

L3_060_256G1_scaffold_1133_20
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21061..21609
DNA (549bp) protein (183aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium termitidis CT1112 RepID=S0FKE0_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EMS72680.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
DNA-directed RNA polymerase
L3_060_256G1_scaffold_1133_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21736..21960)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9P7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ08319.1}; Flags: Fragment;; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
putative site-specific recombinase
Displaying 21 items

View Taxonomy