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L3_060_256G1_scaffold_5

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Displaying items 1-30 of 215 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_5_1
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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65..430
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=4 Tax=Erysipelotrichaceae RepID=B0N4A5_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
rpsM; 30S ribosomal protein S13
L3_060_256G1_scaffold_5_2
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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450..842
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=5 Tax=Erysipelotrichaceae RepID=B0N4A6_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
30S ribosomal protein S11
L3_060_256G1_scaffold_5_3
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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892..1836
DNA (945bp) protein (315aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=5 Tax=Erysipelotrichaceae RepID=B0N4A7_9FIRM
L3_060_256G1_scaffold_5_4
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1869..2231
DNA (363bp) protein (121aa)
50S ribosomal protein L17 n=5 Tax=Erysipelotrichaceae RepID=B0N4A8_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
rplQ; 50S ribosomal protein L17
L3_060_256G1_scaffold_5_5
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2331..3161
DNA (831bp) protein (277aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
ABC transporter, ATP-binding protein n=4 Tax=Erysipelotrichaceae RepID=B0N4A9_9FIRM
cbiO.2; cobalt ABC transporter ATP-binding subunit
L3_060_256G1_scaffold_5_6
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3137..3988
DNA (852bp) protein (284aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
ABC transporter, ATP-binding protein n=5 Tax=Erysipelotrichaceae RepID=B0N4B0_9FIRM
ABC-type cobalt transport system, ATPase component
L3_060_256G1_scaffold_5_7
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3981..4781
DNA (801bp) protein (267aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=G9R4Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33387.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_060_256G1_scaffold_5_8
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4781..5518
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=3 Tax=Erysipelotrichaceae RepID=B0N4B2_9FIRM
L3_060_256G1_scaffold_5_9
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5505..6383
DNA (879bp) protein (293aa)
Histidinol phosphate phosphatase HisJ family n=4 Tax=Erysipelotrichaceae RepID=B0N4B3_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EDS18515.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
histidinol phosphate phosphatase, HisJ family protein
L3_060_256G1_scaffold_5_10
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6853..8052
DNA (1200bp) protein (400aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N4B4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33390.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_060_256G1_scaffold_5_11
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8045..8950
DNA (906bp) protein (302aa)
Uncharacterized protein n=4 Tax=Coprobacillus RepID=C3RPL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44759.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
alpha/beta hydrolase
L3_060_256G1_scaffold_5_12
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8964..11183
DNA (2220bp) protein (740aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Coprobacillus RepID=C3RPL9_9FIRM
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EHM90084.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
Transcriptional regulators
L3_060_256G1_scaffold_5_13
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11173..12621
DNA (1449bp) protein (483aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.21)
Glycosyl hydrolase, family 1 n=5 Tax=Erysipelotrichaceae RepID=B0N4B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33400.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_060_256G1_scaffold_5_14
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12694..13524
DNA (831bp) protein (277aa)
SIS domain protein n=5 Tax=Erysipelotrichaceae RepID=B0N4B8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33401.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
RpiR family transcriptional regulator
L3_060_256G1_scaffold_5_15
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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13536..14564
DNA (1029bp) protein (343aa)
Beta-eliminating lyase n=2 Tax=Erysipelotrichaceae RepID=B0N4B9_9FIRM
Beta-eliminating lyase {ECO:0000313|EMBL:EDS18521.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
aromatic amino acid beta-eliminating lyase/threonine aldolase
L3_060_256G1_scaffold_5_16
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14632..14907
DNA (276bp) protein (92aa)
DNA-binding protein HU n=5 Tax=Erysipelotrichaceae RepID=B0N4C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33403.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Bacterial nucleoid DNA-binding protein
L3_060_256G1_scaffold_5_17
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14920..15333
DNA (414bp) protein (138aa)
Mg2+ transporter-C family protein n=2 Tax=Erysipelotrichaceae RepID=B0N4C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM90089.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
cadA; Cation transport ATPase, MgtC/SapB family
L3_060_256G1_scaffold_5_18
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15377..15538
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N4C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS18524.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
L3_060_256G1_scaffold_5_19
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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15613..16473
DNA (861bp) protein (287aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N4C3_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDS18525.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
AraC family transcriptional regulator
L3_060_256G1_scaffold_5_20
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16553..19216
DNA (2664bp) protein (888aa)
Uncharacterized protein n=4 Tax=Erysipelotrichaceae RepID=C3RPM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44751.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
putative peptidase
L3_060_256G1_scaffold_5_21
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(19241..19873)
DNA (633bp) protein (211aa)
Uncharacterized protein n=4 Tax=Erysipelotrichaceae RepID=B0N4C5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44750.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
hypothetical protein
L3_060_256G1_scaffold_5_22
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(19944..20516)
DNA (573bp) protein (191aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Phosphate propanoyltransferase n=4 Tax=Erysipelotrichaceae RepID=B0N4C6_9FIRM
propanediol utilization protein
L3_060_256G1_scaffold_5_23
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20819..25330
DNA (4512bp) protein (1504aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=G9R505_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM90094.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
glutamate synthase (ferredoxin)
L3_060_256G1_scaffold_5_24
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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25333..26814
DNA (1482bp) protein (494aa)
Pyridine nucleotide-disulfide oxidoreductase n=5 Tax=Erysipelotrichaceae RepID=B0N4C8_9FIRM
Glutamate synthase NADH/NADPH small subunit {ECO:0000313|EMBL:CCZ33884.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
glutamate synthase NADH/NADPH small subunit
L3_060_256G1_scaffold_5_25
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26870..27382)
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Ferritin-like protein n=5 Tax=Erysipelotrichaceae RepID=B0N4C9_9FIRM
Ferritin-like protein
L3_060_256G1_scaffold_5_26
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27454..27984)
DNA (531bp) protein (177aa)
Uncharacterized protein n=4 Tax=Erysipelotrichaceae RepID=B0N4D0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33886.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_060_256G1_scaffold_5_27
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28157..28984
DNA (828bp) protein (276aa)
TIGR00159 family protein n=5 Tax=Erysipelotrichaceae RepID=B0N4D1_9FIRM
TIGR00159 family protein {ECO:0000313|EMBL:CCZ33887.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
hypothetical protein
L3_060_256G1_scaffold_5_28
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28986..30401
DNA (1416bp) protein (472aa)
Uncharacterized protein n=3 Tax=Coprobacillus RepID=G9R510_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33888.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
YbbR-like domain-containing protein YbbR
L3_060_256G1_scaffold_5_29
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30417..31766
DNA (1350bp) protein (450aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=5 Tax=Erysipelotrichaceae RepID=B0N4D3_9FIRM
L3_060_256G1_scaffold_5_30
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

31841..32494
DNA (654bp) protein (218aa)
Transcriptional regulatory protein CssR n=4 Tax=Erysipelotrichaceae RepID=B0N4D4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ33890.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Displaying items 1-30 of 215 in total

View Taxonomy