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L3_060_256G1_scaffold_21

Search features with annotation key words

Displaying items 1-30 of 281 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_21_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(337..1629)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9I2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48229.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
peptidase M56 family protein
L3_060_256G1_scaffold_21_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1635..1988)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9I3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48230.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_21_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2230..2766
DNA (537bp) protein (179aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ3_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EGJ48304.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ECF subfamily RNA polymerase sigma-24 factor
L3_060_256G1_scaffold_21_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2763..4340
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48305.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_21_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4449..5288
DNA (840bp) protein (280aa)
fumarase alpha subunit (EC:4.2.1.2)
Fumarate hydratase subunit alpha n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ5_9FIRM
Fumarate hydratase subunit alpha {ECO:0000313|EMBL:EGJ48306.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_21_6
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5311..6138
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ57638.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L3_060_256G1_scaffold_21_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6177..6731
DNA (555bp) protein (185aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Fumarate hydratase subunit beta n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ7_9FIRM
Fumarate hydratase subunit beta {ECO:0000313|EMBL:EGJ48308.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_21_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6781..7413
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48309.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_21_9
unknown

Not on your lists

comp(7480..7752)
DNA (273bp) protein (91aa)

This feature has no annotations

L3_060_256G1_scaffold_21_10
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7900..8556
DNA (657bp) protein (219aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XCV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA06261.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
L3_060_256G1_scaffold_21_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8743..9402
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48310.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Crp/Fnr family transcriptional regulator
L3_060_256G1_scaffold_21_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9448..10527
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48311.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_060_256G1_scaffold_21_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

10499..11296
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YIZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15166.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
binding-protein-dependent transport system inner membrane protein
L3_060_256G1_scaffold_21_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11293..11886
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9I7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48313.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Fe(3+)-transporting ATPase
L3_060_256G1_scaffold_21_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

12301..13614
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YKH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15721.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
cyclomaltodextrinase
L3_060_256G1_scaffold_21_16
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13835..14911)
DNA (1077bp) protein (359aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M2L3_9FIRM
L3_060_256G1_scaffold_21_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14908..15606)
DNA (699bp) protein (233aa)
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases (EC:4.1.2.17)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD85_9FIRM
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EGJ46781.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_21_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15590..16423)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46782.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
fesA; 4Fe-4S ferredoxin
L3_060_256G1_scaffold_21_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16538..16825)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46783.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_21_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16860..17279)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative Holliday junction resolvase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD88_9FIRM
putative Holliday junction resolvase
L3_060_256G1_scaffold_21_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17363..18508)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46785.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
integrase family protein
L3_060_256G1_scaffold_21_22
unknown

Not on your lists

comp(18523..18684)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_060_256G1_scaffold_21_23
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(18681..19949)
DNA (1269bp) protein (423aa)
Na+/H+ antiporter n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SFE3_9FIRM
Na+/H+ antiporter {ECO:0000313|EMBL:CCZ45486.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
Na+/H+ antiporter
L3_060_256G1_scaffold_21_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20133..20924)
DNA (792bp) protein (264aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Diaminopimelate epimerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ9_9FIRM
diaminopimelate epimerase
L3_060_256G1_scaffold_21_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21233..23341
DNA (2109bp) protein (703aa)
Glutamine synthetase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ8_9FIRM
Glutamine synthetase {ECO:0000313|EMBL:EGJ46954.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamine synthetase catalytic region
L3_060_256G1_scaffold_21_26
unknown

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23517..23729
DNA (213bp) protein (71aa)

This feature has no annotations

L3_060_256G1_scaffold_21_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23895..24329
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46953.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_21_28
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24384..25433)
DNA (1050bp) protein (350aa)
galM; aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Aldose 1-epimerase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KW83_OSCVS
L3_060_256G1_scaffold_21_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25707..26999
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCI1_9FIRM
L3_060_256G1_scaffold_21_30
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

27069..28940
DNA (1872bp) protein (624aa)
carboxyl-terminal protease (EC:3.4.21.102)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15134.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Displaying items 1-30 of 281 in total

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