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L3_060_256G1_scaffold_46

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_46_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..6471)
DNA (6471bp) protein (2157aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9YPA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ09612.1}; Flags: Fragment;; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_060_256G1_scaffold_46_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6877..8049
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42620.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
abortive infection protein
L3_060_256G1_scaffold_46_3
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8052..9230)
DNA (1179bp) protein (393aa)
Bacterial transcriptional activator domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ENP7_9FIRM
Bacterial transcriptional activator domain protein {ECO:0000313|EMBL:EEQ59777.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
DNA-binding transcriptional activator of the SARP family
L3_060_256G1_scaffold_46_4
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9268..9771)
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. CAG:7 RepID=R5J114_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
GreA/GreB family elongation factor
L3_060_256G1_scaffold_46_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10025..10987)
DNA (963bp) protein (321aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKH2_9CLOT
dihydrouridine synthase DuS
L3_060_256G1_scaffold_46_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11151..11999)
DNA (849bp) protein (283aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ15_9FIRM
Creatinine amidohydrolase {ECO:0000313|EMBL:KJF38365.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Uncharacterized protein, putative amidase
L3_060_256G1_scaffold_46_7
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12032..12901)
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2XRH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD54943.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hydrolase
L3_060_256G1_scaffold_46_8
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12946..14325)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RZ29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC73696.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_060_256G1_scaffold_46_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14495..15436
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL74193.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
AraC-type DNA-binding domain-containing proteins
L3_060_256G1_scaffold_46_10
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15560..16468)
DNA (909bp) protein (303aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHD1_9FIRM
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EEQ57616.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
auxin efflux carrier family protein
L3_060_256G1_scaffold_46_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16585..17892)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5INA3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43638.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
dctM; putative TRAP C4-dicarboxylate transport system permease
L3_060_256G1_scaffold_46_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17889..18392)
DNA (504bp) protein (168aa)
TRAP transporter, DctQ-like membrane protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHD4_9FIRM
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:EEQ57619.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
dctQ; putative TRAP C4-dicarboxylate transport system DctQ subunit
L3_060_256G1_scaffold_46_13
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18394..19404)
DNA (1011bp) protein (337aa)
DctP family TRAP transporter solute receptor n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VNK9_9CLOT
DctP family TRAP transporter solute receptor {ECO:0000313|EMBL:ENY92230.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
dctP; putative TRAP C4-dicarboxylate transport system DctP subunit
L3_060_256G1_scaffold_46_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19518..20357)
DNA (840bp) protein (280aa)
AraC family transcriptional regulator n=9 Tax=Clostridium RepID=N9WRN0_9CLOT
AraC family transcriptional regulator {ECO:0000313|EMBL:ENZ18407.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
two component transcriptional regulator, AraC family
L3_060_256G1_scaffold_46_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20354..21793)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Integral membrane sensor signal transduction histidine kinase n=8 Tax=Clostridium RepID=N9WDG1_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_060_256G1_scaffold_46_16
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21923..22141)
DNA (219bp) protein (73aa)
Uncharacterized protein n=18 Tax=Clostridium RepID=A8RS98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ51035.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
Predicted transcriptional regulator
L3_060_256G1_scaffold_46_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22317..22517
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42649.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_060_256G1_scaffold_46_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22537..23244)
DNA (708bp) protein (236aa)
GntR family transcriptional regulator n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9XGF4_9CLOT
GntR family transcriptional regulator {ECO:0000313|EMBL:ENZ14446.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
GntR family transcriptional regulator
L3_060_256G1_scaffold_46_19
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23344..24150)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JEH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61188.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
short-chain dehydrogenase/reductase SDR
L3_060_256G1_scaffold_46_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24195..25037)
DNA (843bp) protein (281aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC:5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J138_9CLOT
L3_060_256G1_scaffold_46_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25290..26528
DNA (1239bp) protein (413aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
6-phosphofructokinase (EC:2.7.1.11)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKK0_9CLOT
L3_060_256G1_scaffold_46_22
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26525..27469
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HFX8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE99622.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
radical SAM protein
L3_060_256G1_scaffold_46_23
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28274..29626)
DNA (1353bp) protein (451aa)
MATE efflux family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHF8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEQ57643.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
putative efflux protein, MATE family
L3_060_256G1_scaffold_46_24
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29762..30325
DNA (564bp) protein (188aa)
Putative manganese efflux pump MntP n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D585_9CLOT
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Predicted membrane protein
L3_060_256G1_scaffold_46_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30407..31150)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKQ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42675.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
choline binding protein G
L3_060_256G1_scaffold_46_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31176..32402)
DNA (1227bp) protein (409aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J0Y7_9CLOT
L3_060_256G1_scaffold_46_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32985..34016
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKM1_9CLOT
L3_060_256G1_scaffold_46_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34087..34929)
DNA (843bp) protein (281aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Undecaprenyl-diphosphatase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKR0_9CLOT
undecaprenol kinase
L3_060_256G1_scaffold_46_29
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35021..35695)
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J168_9CLOT
L3_060_256G1_scaffold_46_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35676..36389)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKR9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42690.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
Displaying items 1-30 of 118 in total

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