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L3_060_256G1_scaffold_54

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_54_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1718
DNA (1716bp) protein (572aa)
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Beta-galactosidase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ65_CLOSW
L3_060_256G1_scaffold_54_2

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comp(1740..3557)
DNA (1818bp) protein (606aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5T7S5_9CLOT
Putative alginate lyase {ECO:0000313|EMBL:BAR73170.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
heparinase II/III family protein
L3_060_256G1_scaffold_54_3
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3562..5238)
DNA (1677bp) protein (559aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JJY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61615.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
sensory transduction histidine kinase
L3_060_256G1_scaffold_54_4
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5187..7046)
DNA (1860bp) protein (620aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JSA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61614.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
integral membrane sensor signal transduction histidine kinase
L3_060_256G1_scaffold_54_5
unknown

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7109..7294
DNA (186bp) protein (62aa)

This feature has no annotations

L3_060_256G1_scaffold_54_6
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7313..8665
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JFR7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61613.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
family 1 extracellular solute-binding protein
L3_060_256G1_scaffold_54_7
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8749..9822
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KHF5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61612.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
ABC transporter inner membrane protein
L3_060_256G1_scaffold_54_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9838..10674
DNA (837bp) protein (279aa)
ABC transporter, permease protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D5F1_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEG53463.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ABC transporter inner membrane protein
L3_060_256G1_scaffold_54_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10717..11898
DNA (1182bp) protein (394aa)
Glycosyl hydrolase, family 88 {ECO:0000313|EMBL:EEG53461.1}; EC=3.2.1.- {ECO:0000313|EMBL:EEG53461.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Glycosyl hydrolase, family 88 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D5E9_9CLOT
putative glucoronyl hydrolase
L3_060_256G1_scaffold_54_10
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11939..13954
DNA (2016bp) protein (672aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JSA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61609.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Heparinase II/III family protein
L3_060_256G1_scaffold_54_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14084..14662
DNA (579bp) protein (193aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILW6_9CLOT
L3_060_256G1_scaffold_54_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14763..16013
DNA (1251bp) protein (417aa)
Spore peptidoglycan hydrolase n=9 Tax=Clostridium RepID=N9XAG7_9CLOT
Spore peptidoglycan hydrolase {ECO:0000313|EMBL:ENZ12331.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
peptidoglycan-binding domain-containing protein
L3_060_256G1_scaffold_54_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16029..17576)
DNA (1548bp) protein (516aa)
Transcriptional antiterminator BglG n=1 Tax=Clostridium sp. CAG:7 RepID=R5J231_9CLOT
Transcriptional antiterminator BglG {ECO:0000313|EMBL:CCY43071.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
transcriptional antiterminator BglG
L3_060_256G1_scaffold_54_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17793..19367
DNA (1575bp) protein (525aa)
Phosphotransferase system EIIC n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILX1_9CLOT
Phosphotransferase system EIIC {ECO:0000313|EMBL:CCY43075.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
PTS system transporter subunit IIC
L3_060_256G1_scaffold_54_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19380..20771
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J2E9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43077.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
fumarate lyase
L3_060_256G1_scaffold_54_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20768..22090
DNA (1323bp) protein (441aa)
Family 4 glycosyl hydrolase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D7G8_9CLOT
Family 4 glycosyl hydrolase {ECO:0000313|EMBL:EEG52743.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
glycoside hydrolase
L3_060_256G1_scaffold_54_17
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22106..23293
DNA (1188bp) protein (396aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZE2_CLOSW
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000313|EMBL:EXG86463.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
L3_060_256G1_scaffold_54_18
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23290..24072
DNA (783bp) protein (261aa)
HAD hydrolase, family IIB n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D7G6_9CLOT
HAD hydrolase, family IIB {ECO:0000313|EMBL:EEG52741.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
HAD-superfamily hydrolase
L3_060_256G1_scaffold_54_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24243..24653
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43078.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
crr; PTS system glucose-specific transporter subunit IIA
L3_060_256G1_scaffold_54_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24910..25983
DNA (1074bp) protein (358aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILV3_9CLOT
L3_060_256G1_scaffold_54_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25983..29201
DNA (3219bp) protein (1073aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
carbamoyl-phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Clostridium sp. CAG:7 RepID=R5IS40_9CLOT
L3_060_256G1_scaffold_54_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29335..30267)
DNA (933bp) protein (311aa)
Carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IRQ0_9CLOT
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_060_256G1_scaffold_54_23
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30419..30868
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KMP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63387.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
CAAX amino terminal protease family.
L3_060_256G1_scaffold_54_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30914..31933
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGU8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39509.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
family 2 glycosyl transferase
L3_060_256G1_scaffold_54_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32013..32678)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IBU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39510.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
phosphoesterase PA-phosphatase-like protein
L3_060_256G1_scaffold_54_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32911..33771
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IS37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39511.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
RpiR family transcriptional regulator
L3_060_256G1_scaffold_54_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33946..34866
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Tagatose-6-phosphate kinase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IRQ4_9CLOT
1-phosphofructokinase
L3_060_256G1_scaffold_54_28
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34870..36795
DNA (1926bp) protein (642aa)
PTS system, Fru family, IIC component n=1 Tax=Clostridium bolteae 90B8 RepID=N9ZKK8_9CLOT
PTS system, Fru family, IIC component {ECO:0000313|EMBL:ENZ40360.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
PTS system fructose subfamily transporter subunit IIC
L3_060_256G1_scaffold_54_29
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36856..37278)
DNA (423bp) protein (141aa)
Hemerythrin-like metal-binding domain-containing protein n=10 Tax=Clostridium RepID=N9WV11_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61023.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hemerythrin-like metal-binding domain
L3_060_256G1_scaffold_54_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37889..38815
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ISV0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39806.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
diacylglycerol kinase catalytic subunit
Displaying items 1-30 of 115 in total

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