ggKbase home page

L3_060_256G1_scaffold_58

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_58_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..250
DNA (249bp) protein (83aa)
Resolvase, N-terminal domain protein n=4 Tax=Clostridiales RepID=A7B819_RUMGN
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEA82748.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
site-specific recombinase
L3_060_256G1_scaffold_58_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

564..707
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B816_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76109.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_060_256G1_scaffold_58_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

774..2939
DNA (2166bp) protein (722aa)
CRISPR-associated endonuclease Cas3-HD {ECO:0000313|EMBL:EEA82746.1}; EC=3.1.-.- {ECO:0000313|EMBL:EEA82746.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CRISPR-associated endonuclease Cas3-HD n=4 Tax=Clostridiales RepID=A7B815_RUMGN
CRISPR-associated helicase, Cas3 family
L3_060_256G1_scaffold_58_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3274..3741
DNA (468bp) protein (156aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B814_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EEA82745.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_060_256G1_scaffold_58_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3725..4165
DNA (441bp) protein (147aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B813_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20914.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_060_256G1_scaffold_58_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4191..4853
DNA (663bp) protein (221aa)
CRISPR-associated protein Cas5, Dvulg subtype n=4 Tax=Clostridiales RepID=A7B812_RUMGN
CRISPR-associated protein Cas5, Dvulg subtype {ECO:0000313|EMBL:EEA82743.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CRISPR-associated protein, Csd5d family
L3_060_256G1_scaffold_58_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4850..6604
DNA (1755bp) protein (585aa)
CRISPR-associated protein, Csd1 family n=4 Tax=Clostridiales RepID=A7B811_RUMGN
CRISPR-associated protein cas8c/csd1, subtype I-c/dvulg {ECO:0000313|EMBL:ETD20912.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
CRISPR-associated protein, Csd1 family
L3_060_256G1_scaffold_58_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6605..7516
DNA (912bp) protein (304aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B810_RUMGN
CRISPR-associated protein cas7/csd2, subtype I-c/dvulg {ECO:0000313|EMBL:ETD20911.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
CRISPR-associated protein, Csd2 family
L3_060_256G1_scaffold_58_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7516..8178
DNA (663bp) protein (221aa)
CRISPR-associated protein Cas4 n=4 Tax=Clostridiales RepID=A7B809_RUMGN
CRISPR-associated protein cas4 {ECO:0000313|EMBL:ETD20910.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
CRISPR-associated exonuclease, Cas4 family
L3_060_256G1_scaffold_58_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8178..9209
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
CRISPR-associated endonuclease Cas1 n=2 Tax=Lachnospiraceae RepID=F7JZ48_9FIRM
CRISPR-associated protein, Cas1 family
L3_060_256G1_scaffold_58_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9222..9512
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CRISPR-associated endoribonuclease Cas2 n=4 Tax=Clostridiales RepID=A7B807_RUMGN
hypothetical protein
L3_060_256G1_scaffold_58_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10645..10923
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B7Z8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20907.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_060_256G1_scaffold_58_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10886..11404
DNA (519bp) protein (173aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=V8C2D2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20906.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
signaling protein
L3_060_256G1_scaffold_58_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11477..12145
DNA (669bp) protein (223aa)
Response regulator receiver domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FMI5_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA82790.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_060_256G1_scaffold_58_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12142..13080
DNA (939bp) protein (313aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Lachnospiraceae RepID=A7B7Z3_RUMGN
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_060_256G1_scaffold_58_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13123..13794
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C0G0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20903.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_060_256G1_scaffold_58_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13798..16551
DNA (2754bp) protein (918aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8C1D5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46202.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted permease.
L3_060_256G1_scaffold_58_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16574..16750
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7X8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76071.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_060_256G1_scaffold_58_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16770..18005
DNA (1236bp) protein (412aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7X7_RUMGN
L3_060_256G1_scaffold_58_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18042..19373)
DNA (1332bp) protein (444aa)
Magnesium transporter n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7X6_RUMGN
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Mg2+ transporter (mgtE)
L3_060_256G1_scaffold_58_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19695..20486
DNA (792bp) protein (264aa)
Methyltransferase domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7X4_RUMGN
Methyltransferase domain protein {ECO:0000313|EMBL:EDN76067.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_060_256G1_scaffold_58_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20520..21395
DNA (876bp) protein (292aa)
33 kDa chaperonin n=4 Tax=Clostridiales RepID=A7B7X3_RUMGN
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Disulfide bond chaperones of the HSP33 family
L3_060_256G1_scaffold_58_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21433..23349
DNA (1917bp) protein (639aa)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthetase n=2 Tax=Lachnospiraceae RepID=V8C2B5_RUMGN
NAD+ synthetase {ECO:0000313|EMBL:ETD20891.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_060_256G1_scaffold_58_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23377..24396
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TS80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68618.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
moeA2; molybdopterin biosynthesis protein MoeA2
L3_060_256G1_scaffold_58_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24342..25367
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7X0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76063.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
L3_060_256G1_scaffold_58_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25625..26908
DNA (1284bp) protein (428aa)
Cytosine deaminase and related metal-dependent hydrolases (EC:3.5.4.3)
Guanine deaminase n=2 Tax=Lachnospiraceae RepID=V8C0E4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46187.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_060_256G1_scaffold_58_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26952..29249
DNA (2298bp) protein (766aa)
Xanthine dehydrogenase subunit XdhA n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7W8_RUMGN
Xanthine dehydrogenase subunit XdhA {ECO:0000313|EMBL:EDN76061.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
L3_060_256G1_scaffold_58_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29272..30159
DNA (888bp) protein (296aa)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs (EC:1.17.1.4)
Xanthine dehydrogenase subunit XdhB n=3 Tax=Lachnospiraceae RepID=A7B7W7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46185.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_060_256G1_scaffold_58_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30152..30649
DNA (498bp) protein (166aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B7W6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20885.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
(2Fe-2S)-binding domain-containing protein
L3_060_256G1_scaffold_58_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30721..31482
DNA (762bp) protein (254aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B7W5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46183.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 122 in total

View Taxonomy