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L3_060_256G1_scaffold_114

Search features with annotation key words

Displaying items 1-30 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_114_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(160..1002)
DNA (843bp) protein (281aa)
Glucosamine-6-phosphate isomerase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DU69_BIFLD
magB; glucosamine-6-phosphate isomerase
Glucosamine-6-phosphate isomerase {ECO:0000313|EMBL:ACD98688.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_060_256G1_scaffold_114_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1297..2322)
DNA (1026bp) protein (342aa)
Glucose-6-P dehydrogenase subunit n=2 Tax=Bifidobacterium longum RepID=B3DU68_BIFLD
hypothetical protein
Glucose-6-P dehydrogenase subunit {ECO:0000313|EMBL:ACD98687.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_060_256G1_scaffold_114_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2319..3857)
DNA (1539bp) protein (513aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Glucose-6-phosphate 1-dehydrogenase n=11 Tax=Bifidobacterium RepID=Q8G732_BIFLO
zwf; zwf
L3_060_256G1_scaffold_114_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4180..5814
DNA (1635bp) protein (545aa)
Dipeptidase (EC:3.4.-.-)
Dipeptidase n=8 Tax=Bifidobacterium RepID=Q8G733_BIFLO
Peptidase C69 {ECO:0000313|EMBL:KEY23561.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_060_256G1_scaffold_114_5
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5888..6922)
DNA (1035bp) protein (345aa)
Glycosyltransferase, group 2 family protein n=3 Tax=Bifidobacterium RepID=C5E914_BIFLI
glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:CCY95249.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_060_256G1_scaffold_114_6
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6946..7767)
DNA (822bp) protein (274aa)
Transcriptional regulator, TetR family n=13 Tax=Bifidobacterium RepID=V6XZ03_BIFLN
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CCY95250.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_060_256G1_scaffold_114_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7881..9152
DNA (1272bp) protein (424aa)
Signal recognition particle receptor FtsY n=2 Tax=Bifidobacterium longum RepID=B3DU63_BIFLD
ftsY; signal recognition particle GTPase
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_060_256G1_scaffold_114_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9520..10815
DNA (1296bp) protein (432aa)
Ammonium transporter n=13 Tax=Bifidobacterium RepID=D6DAI0_BIFLN
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_060_256G1_scaffold_114_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10817..11155
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=20 Tax=Bifidobacterium RepID=B3DU61_BIFLD
nitrogen regulatory protein
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:AIW43232.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_060_256G1_scaffold_114_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11249..13090
DNA (1842bp) protein (614aa)
(Protein-PII) uridylyltransferase n=12 Tax=Bifidobacterium RepID=F8ATS4_BIFLN
(Protein-PII) uridylyltransferase
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|SAAS:SAAS00228994}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_060_256G1_scaffold_114_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13124..14566)
DNA (1443bp) protein (481aa)
Na+-driven multidrug efflux pump n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DU59_BIFLD
Multidrug transporter MatE {ECO:0000313|EMBL:KHD94610.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
norM4; Na+-driven multidrug efflux pump
L3_060_256G1_scaffold_114_12
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14772..16301
DNA (1530bp) protein (510aa)
Replicative DNA helicase n=21 Tax=Bifidobacterium RepID=D6ZXR6_BIFLJ
replicative DNA helicase
Replicative DNA helicase {ECO:0000313|EMBL:CCY95256.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_060_256G1_scaffold_114_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16301..17773
DNA (1473bp) protein (491aa)
UDP-N-acetylmuramyl tripeptide synthase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DU57_BIFLD
murE2; UDP-N-acetylmuramyl tripeptide synthase
UDP-N-acetylmuramyl tripeptide synthase {ECO:0000313|EMBL:ACD98676.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_060_256G1_scaffold_114_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17876..18628
DNA (753bp) protein (251aa)
Predicted glutamine amidotransferase n=12 Tax=Bifidobacterium RepID=D6DAH4_BIFLN
glutamine amidotransferase
Predicted glutamine amidotransferase {ECO:0000313|EMBL:CBK71177.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_060_256G1_scaffold_114_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18777..19064
DNA (288bp) protein (96aa)
Uncharacterized protein n=15 Tax=Bifidobacterium RepID=Q8G744_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY31835.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_060_256G1_scaffold_114_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19061..20881
DNA (1821bp) protein (607aa)
ABC-1 domain protein n=11 Tax=Bifidobacterium RepID=D6ZXS0_BIFLJ
hypothetical protein
ABC1 family protein {ECO:0000313|EMBL:EIJ32028.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_060_256G1_scaffold_114_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20896..21918)
DNA (1023bp) protein (341aa)
LacI-type transcriptional regulator n=10 Tax=Bifidobacterium RepID=E4R0L7_BIFLM
transcriptional regulator
Sugar-binding domain protein {ECO:0000313|EMBL:EEI81648.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_060_256G1_scaffold_114_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22406..23731
DNA (1326bp) protein (442aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=13 Tax=Bifidobacterium RepID=D6DAH2_BIFLN
ABC transporter substrate-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EIJ27081.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_060_256G1_scaffold_114_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24019..24945
DNA (927bp) protein (309aa)
ABC transporter permease component n=7 Tax=Bifidobacterium RepID=E8MGH6_BIFL2
ABC transporter permease
ABC transporter permease component {ECO:0000313|EMBL:BAJ65879.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_060_256G1_scaffold_114_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24966..25784
DNA (819bp) protein (273aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=14 Tax=Bifidobacterium RepID=D6DAH0_BIFLN
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EIJ27095.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_060_256G1_scaffold_114_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25945..27921
DNA (1977bp) protein (659aa)
Non-reducing end beta-L-arabinofuranosidase; EC=3.2.1.185;; Beta-L-arabinofuranosidase HypBA1; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R0L3_BIFLM
hypothetical protein
L3_060_256G1_scaffold_114_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28620..34451
DNA (5832bp) protein (1944aa)
Bacterial Ig-like domain (Group 4)./Uncharacterised Sugar-binding Domain./F5/8 type C domain n=3 Tax=Bifidobacterium longum RepID=D6DAG8_BIFLN
Bacterial Ig-like domain (Group 4)./Uncharacterised Sugar-binding Domain./F5/8 type C domain {ECO:0000313|EMBL:CBK71171.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
hypothetical protein
L3_060_256G1_scaffold_114_23
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34556..38272
DNA (3717bp) protein (1239aa)
Probable extracellular protein possibly involved in xylan or arabinan degredation n=3 Tax=Bifidobacterium RepID=E4R0K8_BIFLM
extracellular protein
Probable extracellular protein possibly involved in xylan or arabinan degradation {ECO:0000313|EMBL:CCY95267.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_060_256G1_scaffold_114_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38403..39236
DNA (834bp) protein (278aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=Q8G753_BIFLO
pyridoxal phosphate enzyme, YggS family
Uncharacterized protein {ECO:0000313|EMBL:AAN24256.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_060_256G1_scaffold_114_25
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39312..40325)
DNA (1014bp) protein (338aa)
Phosphoribosylpyrophosphate synthetase n=13 Tax=Bifidobacterium RepID=B3DU47_BIFLD
ribose-phosphate pyrophosphokinase
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CCY95269.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_060_256G1_scaffold_114_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40447..40929)
DNA (483bp) protein (161aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=C5E8Z2_BIFLI
Heme utilization protein {ECO:0000313|EMBL:KHD94595.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
hypothetical protein
L3_060_256G1_scaffold_114_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


41094..41384
DNA (291bp) protein (97aa)
30S ribosomal protein S6 n=26 Tax=Bifidobacterium RepID=RS6_BIFLO
rpsF; SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_060_256G1_scaffold_114_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41441..42097
DNA (657bp) protein (219aa)
Single-stranded DNA-binding protein n=5 Tax=Bifidobacterium longum RepID=D6ZXS6_BIFLJ
single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_060_256G1_scaffold_114_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


42158..42406
DNA (249bp) protein (83aa)
30S ribosomal protein S18 n=21 Tax=Bifidobacterium RepID=RS18_BIFLO
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_060_256G1_scaffold_114_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


42426..42872
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=17 Tax=Bifidobacterium RepID=RL9_BIFLD
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Displaying items 1-30 of 138 in total

View Taxonomy