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L3_060_256G1_scaffold_125

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Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_125_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(100..969)
DNA (870bp) protein (290aa)
Transcriptional regulator, AraC family n=3 Tax=Lachnospiraceae RepID=A7B0G0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47406.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
AraC family transcriptional regulator
L3_060_256G1_scaffold_125_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1190..2698
DNA (1509bp) protein (503aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B0G1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47405.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC transporter
L3_060_256G1_scaffold_125_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2698..3705
DNA (1008bp) protein (336aa)
Branched-chain amino acid ABC transporter, permease protein n=3 Tax=Lachnospiraceae RepID=A7B0G2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47404.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC transporter permease subunit
L3_060_256G1_scaffold_125_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3705..4979
DNA (1275bp) protein (425aa)
Branched-chain amino acid ABC transporter, permease protein n=3 Tax=Lachnospiraceae RepID=A7B0G3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16994.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
monosaccharide-transporting ATPase
L3_060_256G1_scaffold_125_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5033..6220
DNA (1188bp) protein (396aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B0G4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47402.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rhamnose ABC transporter substrate-binding protein
L3_060_256G1_scaffold_125_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6251..7822
DNA (1572bp) protein (524aa)
L-xylulose/3-keto-L-gulonate kinase (EC:2.7.1.53 2.7.1.-)
Carbohydrate kinase, FGGY family protein n=3 Tax=Lachnospiraceae RepID=A7B0G5_RUMGN
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EDN78631.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_060_256G1_scaffold_125_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7942..8256
DNA (315bp) protein (105aa)
L-rhamnose mutarotase {ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|SAAS:SAAS00169483};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rhaU; L-rhamnose 1-epimerase (EC:5.1.3.-)
L-rhamnose 1-epimerase n=3 Tax=Lachnospiraceae RepID=A7B0G6_RUMGN
L3_060_256G1_scaffold_125_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8257..9132)
DNA (876bp) protein (292aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TNE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67298.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
AraC family transcriptional regulator
L3_060_256G1_scaffold_125_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9299..10375
DNA (1077bp) protein (359aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=3 Tax=Lachnospiraceae RepID=A7B0G9_RUMGN
L3_060_256G1_scaffold_125_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10378..11988
DNA (1611bp) protein (537aa)
Mannitol-1-phosphate/altronate dehydrogenases (EC:1.1.1.57)
Mannitol dehydrogenase domain protein n=4 Tax=Clostridiales RepID=A7B0H0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ67300.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_060_256G1_scaffold_125_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12000..13406
DNA (1407bp) protein (469aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uronate isomerase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U832_9FIRM
glucuronate isomerase
L3_060_256G1_scaffold_125_12
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13460..15895)
DNA (2436bp) protein (812aa)
cellobiose phosphorylase (EC:2.4.1.20)
Cellobiose phosphorylase n=1 Tax=Clostridium sp. CAG:75 RepID=R5SDH6_9CLOT
Cellobiose phosphorylase {ECO:0000313|EMBL:CCZ51730.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
L3_060_256G1_scaffold_125_13
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15923..16564)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I7S2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32836.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L3_060_256G1_scaffold_125_14
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16805..17752
DNA (948bp) protein (316aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R8_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41368.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_060_256G1_scaffold_125_15
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17765..18685
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HST8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32838.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L3_060_256G1_scaffold_125_16
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18726..20495
DNA (1770bp) protein (590aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FGP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS70740.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
extracellular solute-binding protein
L3_060_256G1_scaffold_125_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20542..22632
DNA (2091bp) protein (697aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GCG6_9FIRM
L3_060_256G1_scaffold_125_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22649..24133
DNA (1485bp) protein (495aa)
Alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BP83_9FIRM
Alpha-L-fucosidase {ECO:0000313|EMBL:CDA55062.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_060_256G1_scaffold_125_19
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24157..24837
DNA (681bp) protein (227aa)
GDSL family lipase n=1 Tax=Paenibacillus mucilaginosus K02 RepID=I0BLB4_9BACL
GDSL family lipase
GDSL family lipase {ECO:0000313|EMBL:AFH63161.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
L3_060_256G1_scaffold_125_20
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24818..25828
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N1D1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS73867.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
esterase
L3_060_256G1_scaffold_125_21
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25819..27357)
DNA (1539bp) protein (513aa)
Two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FNN4_9CLOT
Two component transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EMS70744.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_060_256G1_scaffold_125_22
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27354..29171)
DNA (1818bp) protein (606aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Putative viral phosphatase n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AK02_9CLOT
hypothetical protein
L3_060_256G1_scaffold_125_23
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29362..31686
DNA (2325bp) protein (775aa)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Roseburia sp. CAG:182 RepID=R7QYR9_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CDF42586.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
alpha-xylosidase
L3_060_256G1_scaffold_125_24
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31688..33772
DNA (2085bp) protein (695aa)
beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LHJ9_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EET59986.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
L3_060_256G1_scaffold_125_25
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33788..35320
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NEX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC09660.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
glycoside hydrolase family 43 protein
L3_060_256G1_scaffold_125_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35381..36142)
DNA (762bp) protein (254aa)
Transcriptional regulator, IclR family, C-terminal domain protein n=3 Tax=Lachnospiraceae RepID=A7B0H2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17002.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
transcriptional regulator, IclR family
L3_060_256G1_scaffold_125_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36376..37335
DNA (960bp) protein (320aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:EDN78639.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EDN78639.1};; EC=4.1.3.16 {ECO:0000313|EMBL:EDN78639.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Entner-Doudoroff aldolase (EC:4.1.2.14 4.1.3.16)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=3 Tax=Lachnospiraceae RepID=A7B0H3_RUMGN
L3_060_256G1_scaffold_125_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37359..38384
DNA (1026bp) protein (342aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Kinase, PfkB family n=3 Tax=Lachnospiraceae RepID=A7B0H4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17004.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_060_256G1_scaffold_125_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38573..39424
DNA (852bp) protein (284aa)
ketose-bisphosphate aldolases (EC:4.1.2.40 4.1.2.13)
Ketose-bisphosphate aldolase n=3 Tax=Lachnospiraceae RepID=A7B0H5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17005.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_060_256G1_scaffold_125_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39462..40472
DNA (1011bp) protein (337aa)
transcriptional regulator, LacI family (EC:5.1.1.1)
Sugar-binding domain protein n=3 Tax=Lachnospiraceae RepID=A7B0H6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47391.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Displaying items 1-30 of 80 in total

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