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L3_060_256G1_scaffold_148

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_148_1
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(179..778)
DNA (600bp) protein (200aa)
Resolvase, N-terminal domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YED4_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEF65639.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_060_256G1_scaffold_148_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(1059..1979)
DNA (921bp) protein (307aa)
Elongation factor Ts n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YB53_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
tsf; elongation factor Ts
L3_060_256G1_scaffold_148_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2097..2822)
DNA (726bp) protein (242aa)
30S ribosomal protein S2 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDL2_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsB; 30S ribosomal protein S2
L3_060_256G1_scaffold_148_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3587..4009)
DNA (423bp) protein (141aa)
XRE family transcriptional regulator n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237891C
Putative Xre family DNA-binding protein {ECO:0000313|EMBL:GAO37986.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
XRE family transcriptional regulator
L3_060_256G1_scaffold_148_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4447..4614
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAP8_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpmG; 50S ribosomal protein L33
L3_060_256G1_scaffold_148_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4655..4951
DNA (297bp) protein (99aa)
Protein translocase subunit SecE n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAP7_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
secE; preprotein translocase subunit SecE
L3_060_256G1_scaffold_148_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4957..5481
DNA (525bp) protein (175aa)
Transcription termination/antitermination protein NusG n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAP6_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
nusG; transcription antitermination protein NusG
L3_060_256G1_scaffold_148_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5618..6043
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=3 Tax=Clostridiales RepID=G9YMY3_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
rplK; ribosomal protein L11
L3_060_256G1_scaffold_148_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6058..6750
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAP3_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplA; 50S ribosomal protein L1
L3_060_256G1_scaffold_148_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7039..7986
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48298.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit
L3_060_256G1_scaffold_148_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8097..9197
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48302.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_148_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9257..10351)
DNA (1095bp) protein (365aa)
TIGR00300 family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY0_9FIRM
TIGR00300 family protein {ECO:0000313|EMBL:EGJ47508.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_148_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(10612..11031)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YGV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14827.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_060_256G1_scaffold_148_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11036..11332)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70203.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_060_256G1_scaffold_148_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11393..11923)
DNA (531bp) protein (177aa)
Acetyltransferase, GNAT family (EC:2.3.1.-)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX08_9FIRM
Acetyltransferase {ECO:0000313|EMBL:KJF39453.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_060_256G1_scaffold_148_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11984..12877)
DNA (894bp) protein (298aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA84_9FIRM
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EGJ47262.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_148_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13183..14610)
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47270.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
MATE efflux family protein
L3_060_256G1_scaffold_148_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14782..16404)
DNA (1623bp) protein (541aa)
Cell volume regulation protein A n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA93_9FIRM
Cell volume regulation protein A {ECO:0000313|EMBL:EGJ47271.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_148_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16619..16981)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46369.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_148_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17259..17747
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46370.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_060_256G1_scaffold_148_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17757..18602
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46371.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Protein of unknown function (DUF3298).
L3_060_256G1_scaffold_148_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18760..19206
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46372.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Transcriptional regulators
L3_060_256G1_scaffold_148_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19216..19779
DNA (564bp) protein (188aa)
Putative manganese efflux pump MntP n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE68_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted membrane protein
L3_060_256G1_scaffold_148_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19851..20927)
DNA (1077bp) protein (359aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFC7_9FIRM
6-phosphofructokinase {ECO:0000313|EMBL:EGJ46147.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_148_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20958..21980)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48316.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
aldo/keto reductase
L3_060_256G1_scaffold_148_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22112..22642)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47513.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spore cortex-lytic protein
L3_060_256G1_scaffold_148_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22639..23859)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47514.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
iron transporter FeoB
L3_060_256G1_scaffold_148_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23868..24260)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47515.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
peptidoglycan-binding domain 1 protein
L3_060_256G1_scaffold_148_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24399..25400)
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY8_9FIRM
L3_060_256G1_scaffold_148_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25432..26094)
DNA (663bp) protein (221aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY9_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
Displaying items 1-30 of 92 in total

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