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L3_060_256G1_scaffold_153

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Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_153_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(394..972)
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85670.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
putative HD superfamily hydrolase
L3_060_256G1_scaffold_153_2
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1538..2335
DNA (798bp) protein (266aa)
Probable DNA repair protein HMPREF9406_2053 n=5 Tax=Firmicutes RepID=E4LPG8_9CLOT
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Ku protein
L3_060_256G1_scaffold_153_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2335..3267
DNA (933bp) protein (311aa)
ATP-dependent DNA ligase domain protein n=5 Tax=Firmicutes RepID=E4LPG9_9CLOT
mRNA capping enzyme, catalytic domain protein {ECO:0000313|EMBL:EQJ53866.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ATP dependent DNA ligase
L3_060_256G1_scaffold_153_4
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3604..4527
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85666.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ABC transporter ATP-binding protein
L3_060_256G1_scaffold_153_5
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4524..5426
DNA (903bp) protein (301aa)
ABC-2 type transporter n=5 Tax=Firmicutes RepID=E4LPH1_9CLOT
ABC transporter permease {ECO:0000313|EMBL:KGJ53786.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
ABC-2 family transporter protein
L3_060_256G1_scaffold_153_6
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5438..5878
DNA (441bp) protein (147aa)
LytTr DNA-binding domain protein n=5 Tax=Firmicutes RepID=E4LPH2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC83283.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
putative DNA-binding rotein
L3_060_256G1_scaffold_153_7
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5890..6318
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85663.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_060_256G1_scaffold_153_8
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6642..8384)
DNA (1743bp) protein (581aa)
aspS; aspartyl-tRNA ligase (EC:6.1.1.12)
Aspartate--tRNA ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNK9_9FIRM
Aspartate-tRNA ligase {ECO:0000313|EMBL:ENY85661.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_060_256G1_scaffold_153_9
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(8396..9733)
DNA (1338bp) protein (446aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
hisS; histidyl-tRNA ligase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SJ81_9FIRM
L3_060_256G1_scaffold_153_10
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10226..10963)
DNA (738bp) protein (246aa)
Probable transcriptional regulatory protein HMPREF0983_01085 n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SJ82_9FIRM
Probable transcriptional regulatory protein HMPREF0983_01085 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
hypothetical protein
L3_060_256G1_scaffold_153_11
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11170..12408)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNK6_9FIRM
Membrane protein {ECO:0000313|EMBL:KGJ53793.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
hypothetical protein
L3_060_256G1_scaffold_153_12
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12577..13443)
DNA (867bp) protein (289aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85657.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_060_256G1_scaffold_153_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13793..16192)
DNA (2400bp) protein (800aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
leuS; leucyl-tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=5 Tax=Firmicutes RepID=E4LZN3_9CLOT
L3_060_256G1_scaffold_153_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16490..16732)
DNA (243bp) protein (81aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1AS44_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EQJ53880.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_060_256G1_scaffold_153_15
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17087..18472)
DNA (1386bp) protein (462aa)
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:EFR35714.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EFR35714.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
glutamate synthase (NADPH), homotetrameric (EC:1.4.1.13)
Glutamate synthase (NADPH), homotetrameric n=3 Tax=Firmicutes RepID=E4LZN1_9CLOT
L3_060_256G1_scaffold_153_16
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18474..19316)
DNA (843bp) protein (281aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Ferredoxin--NADP+ reductase, subunit alpha n=7 Tax=Firmicutes RepID=E4LZN0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC83261.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_060_256G1_scaffold_153_17
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19616..20377)
DNA (762bp) protein (254aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=5 Tax=Firmicutes RepID=E4LZM9_9CLOT
L3_060_256G1_scaffold_153_18
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20386..21390)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNJ8_9FIRM
DctP family TRAP transporter solute receptor {ECO:0000313|EMBL:ENY85651.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_060_256G1_scaffold_153_19
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21404..22696)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX76482.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
TRAP transporter, DctM subunit
L3_060_256G1_scaffold_153_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22701..23213)
DNA (513bp) protein (171aa)
TRAP transporter, DctQ-like membrane protein n=4 Tax=Firmicutes RepID=E4LZM6_9CLOT
Tripartite ATP-independent periplasmic transporter, DctQ family {ECO:0000313|EMBL:EQJ53886.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
TRAP-type C4-dicarboxylate transport system, small permease component
L3_060_256G1_scaffold_153_21
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23298..24476)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85648.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Major Facilitator Superfamily.
L3_060_256G1_scaffold_153_22
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24504..25376)
DNA (873bp) protein (291aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=7 Tax=Firmicutes RepID=E4LZM4_9CLOT
L3_060_256G1_scaffold_153_23
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25415..27409)
DNA (1995bp) protein (665aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UFG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC83225.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L3_060_256G1_scaffold_153_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27571..28476
DNA (906bp) protein (302aa)
LysR substrate binding domain protein n=4 Tax=Firmicutes RepID=E4LZM2_9CLOT
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EQJ53890.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
yybE1; HTH-type transcriptional regulator YybE
L3_060_256G1_scaffold_153_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28780..30045
DNA (1266bp) protein (422aa)
Shikimate 5-dehydrogenase n=2 Tax=Erysipelotrichaceae RepID=H1AS55_9FIRM
Shikimate kinase {ECO:0000313|EMBL:CDC83221.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Shikimate 5-dehydrogenase
L3_060_256G1_scaffold_153_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30065..31081
DNA (1017bp) protein (339aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNJ0_9FIRM
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:KGJ53740.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_060_256G1_scaffold_153_27
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(31182..32177)
DNA (996bp) protein (332aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Pyruvate kinase n=3 Tax=Firmicutes RepID=E4LZL8_9CLOT
Pyruvate kinase
L3_060_256G1_scaffold_153_28
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(32955..33728)
DNA (774bp) protein (258aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SJA1_9FIRM
conserved hypothetical protein TIGR00486
L3_060_256G1_scaffold_153_29
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(33746..34786)
DNA (1041bp) protein (347aa)
M42 glutamyl aminopeptidase n=1 Tax=Clostridium sp. HGF2 RepID=E4LZL4_9CLOT
Peptidase M20 {ECO:0000313|EMBL:KGJ53743.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
endoglucanase
L3_060_256G1_scaffold_153_30
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(34779..35183)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VNI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY85638.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical membrane protein
Displaying items 1-30 of 94 in total

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