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L3_060_256G1_scaffold_164

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_164_1
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(229..1995)
DNA (1767bp) protein (589aa)
recJ2; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:AGX44953.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX44953.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWQ6_CLOSA
L3_060_256G1_scaffold_164_2
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2098..2655)
DNA (558bp) protein (186aa)
DJ-1 family protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M9Z8_9CLOT
DJ-1 family protein {ECO:0000313|EMBL:EHJ01537.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
DJ-1 family protein
L3_060_256G1_scaffold_164_3
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2942..5833)
DNA (2892bp) protein (964aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
DNA topoisomerase IV subunit A n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G543_CLOPA
DNA topoisomerase IV subunit A
L3_060_256G1_scaffold_164_4
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5980..7929)
DNA (1950bp) protein (650aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000313|EMBL:EHJ01539.1}; EC=5.99.1.3 {ECO:0000313|EMBL:EHJ01539.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium sp. DL-VIII RepID=G7MA00_9CLOT
DNA topoisomerase IV subunit B
L3_060_256G1_scaffold_164_5
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8335..9729)
DNA (1395bp) protein (465aa)
glycosyl transferase family 2 n=1 Tax=Clostridium beijerinckii RepID=UPI0002D50FA9
glycosyl transferase family protein
Glycosyl transferase family protein {ECO:0000313|EMBL:AJH01377.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_060_256G1_scaffold_164_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10089..11435)
DNA (1347bp) protein (449aa)
UPI0003D5B0C3 related cluster n=1 Tax=unknown RepID=UPI0003D5B0C3
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
glu/Leu/Phe/Val dehydrogenase, dimerization domain protein
L3_060_256G1_scaffold_164_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11610..12224)
DNA (615bp) protein (205aa)
Putative membrane protein n=2 Tax=Clostridium butyricum RepID=B1QXD2_CLOBU
Putative membrane protein {ECO:0000313|EMBL:EEP55292.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L3_060_256G1_scaffold_164_8
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12224..13213)
DNA (990bp) protein (330aa)
gluP2; rhomboid protease GluP (EC:3.4.21.105)
Rhomboid protease GluP {ECO:0000313|EMBL:AGF58360.1}; EC=3.4.21.105 {ECO:0000313|EMBL:AGF58360.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Rhomboid protease GluP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LYL0_9CLOT
L3_060_256G1_scaffold_164_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13608..15398)
DNA (1791bp) protein (597aa)
yjbG; oligoendopeptidase F (EC:3.4.24.-)
Oligoendopeptidase F n=2 Tax=Clostridium butyricum RepID=B1QXD4_CLOBU
Oligoendopeptidase F {ECO:0000313|EMBL:ENZ31514.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_060_256G1_scaffold_164_10
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15569..15967)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002D31A11
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJH01380.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_060_256G1_scaffold_164_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16270..16686
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M1F9_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR36439.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_060_256G1_scaffold_164_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16771..17442
DNA (672bp) protein (224aa)
Zinc import ATP-binding protein ZnuC n=2 Tax=Clostridium butyricum RepID=B1QXE1_CLOBU
Putative metal ion ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEP55715.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
metal transport system ATP-binding protein
L3_060_256G1_scaffold_164_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17464..18264
DNA (801bp) protein (267aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Clostridium sp. DL-VIII RepID=G7MA09_9CLOT
ABC-3 protein {ECO:0000313|EMBL:AJH01388.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
ABC transporter
L3_060_256G1_scaffold_164_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18403..18843)
DNA (441bp) protein (147aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LR63_CLOB8
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
L3_060_256G1_scaffold_164_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19505..20017)
DNA (513bp) protein (171aa)
Cna protein B-type domain n=4 Tax=Clostridium butyricum RepID=B1QXF2_CLOBU
Cna B domain protein {ECO:0000313|EMBL:EEP55501.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Cna B domain protein
L3_060_256G1_scaffold_164_16
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20086..25395)
DNA (5310bp) protein (1770aa)
Diguanylate cyclase with TPR repeats n=1 Tax=Clostridium sp. DL-VIII RepID=G7MA39_9CLOT
Diguanylate cyclase with TPR repeats {ECO:0000313|EMBL:EHJ01805.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
diguanylate cyclase
L3_060_256G1_scaffold_164_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25507..26226
DNA (720bp) protein (240aa)
yheN2; putative polysaccharide deacetylase YheN (EC:3.-.-.-)
Putative polysaccharide deacetylase YheN {ECO:0000313|EMBL:AGX44974.1}; EC=3.-.-.- {ECO:0000313|EMBL:AGX44974.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative polysaccharide deacetylase YheN n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MW33_CLOSA
L3_060_256G1_scaffold_164_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26287..26805)
DNA (519bp) protein (173aa)
Putative tryptophan transport protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1A7_CLOBA
Putative membrane protein {ECO:0000313|EMBL:AIY80314.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
putative tryptophan transport protein
L3_060_256G1_scaffold_164_19
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26850..27374)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MLN5_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF58829.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_060_256G1_scaffold_164_20
unknown

Not on your lists

comp(27781..27885)
DNA (105bp) protein (35aa)

This feature has no annotations

L3_060_256G1_scaffold_164_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27922..28110)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MZP6_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX44977.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_060_256G1_scaffold_164_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28229..29101)
DNA (873bp) protein (291aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWS4_CLOSA
ttcA1; tRNA 2-thiocytidine biosynthesis protein TtcA
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000313|EMBL:AGX44978.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_060_256G1_scaffold_164_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29810..30019
DNA (210bp) protein (70aa)
Phage shock protein C, PspC n=1 Tax=Clostridium sp. DL-VIII RepID=G7MA47_9CLOT
Phage shock protein C, PspC {ECO:0000313|EMBL:EHJ01813.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PspC protein
L3_060_256G1_scaffold_164_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30219..30809
DNA (591bp) protein (197aa)
Membrane protein n=2 Tax=Clostridium botulinum B RepID=B2TLA7_CLOBB
membrane protein
Membrane protein {ECO:0000313|EMBL:ACD23918.1}; Substrate-specific component PanT of predicted pantothenate ECF transporter {ECO:0000313|EMBL:CDH89677.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_060_256G1_scaffold_164_25
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30912..31877
DNA (966bp) protein (322aa)
Peptidase S58 DmpA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWM1_CLOSA
peptidase S58 DmpA
Peptidase S58 DmpA {ECO:0000313|EMBL:AGX44980.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_060_256G1_scaffold_164_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31964..32923)
DNA (960bp) protein (320aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0ASJ7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ35684.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_060_256G1_scaffold_164_27
Lysinibacillus sp. A1, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33080..33628)
DNA (549bp) protein (183aa)
ribosomal-protein-alanine acetyltransferase n=1 Tax=Clostridium arbusti RepID=UPI000288A57C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHK53373.1}; TaxID=1571920 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus sp. A1.;"
L3_060_256G1_scaffold_164_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33839..35218)
DNA (1380bp) protein (460aa)
UPI0003D5B559 related cluster n=1 Tax=unknown RepID=UPI0003D5B559
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ETI90925.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
sodium:dicarboxylate symporter family protein
L3_060_256G1_scaffold_164_29
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35426..36361)
DNA (936bp) protein (312aa)
Putative deacylase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUH7_9CLOT
Putative deacylase {ECO:0000313|EMBL:EKQ51041.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
succinylglutamate desuccinylase/aspartoacylase
L3_060_256G1_scaffold_164_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36361..37296)
DNA (936bp) protein (312aa)
Putative deacylase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MR56_CLOSA
putative deacylase
Putative deacylase {ECO:0000313|EMBL:AGX41877.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying items 1-30 of 90 in total

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