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L3_060_256G1_scaffold_176

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Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_176_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..125)
DNA (123bp) protein (41aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
3-hydroxydecanoyl-(Acyl carrier protein) dehydratase n=1 Tax=Escherichia coli ECC-1470 RepID=V6PQV9_ECOLX
fabA; 3-hydroxydecanoyl-ACP dehydratase
L3_060_256G1_scaffold_176_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(86..1846)
DNA (1761bp) protein (587aa)
Protease La n=75 Tax=Escherichia coli RepID=D6IM26_ECOLX
ycbZ; putative ATP-dependent protease
Lon protease proteolytic domain protein {ECO:0000313|EMBL:ESA90320.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_060_256G1_scaffold_176_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2032..2484
DNA (453bp) protein (151aa)
Macrodomain Ter protein n=824 Tax=Enterobacteriaceae RepID=MATP_ECO55
Ter macrodomain organizer matS-binding protein
Macrodomain Ter protein {ECO:0000256|HAMAP-Rule:MF_01073, ECO:0000256|SAAS:SAAS00064857}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
L3_060_256G1_scaffold_176_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2560..3600)
DNA (1041bp) protein (347aa)
Outer membrane protein A n=68 Tax=Escherichia coli RepID=Q49P73_ECOLX
ompA; outer membrane protein A
Outer membrane protein A (3aII*Gd) {ECO:0000313|EMBL:CAR12355.1}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
L3_060_256G1_scaffold_176_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3956..4465)
DNA (510bp) protein (170aa)
Cell division inhibitor SulA n=934 Tax=Enterobacteriaceae RepID=SULA_ECOLX
cell division inhibitor SulA
Cell division inhibitor SulA {ECO:0000256|HAMAP-Rule:MF_01179, ECO:0000256|SAAS:SAAS00088372}; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BCE030_MS-09.;"
L3_060_256G1_scaffold_176_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4684..5313
DNA (630bp) protein (210aa)
Protein Sxy n=704 Tax=Enterobacteriaceae RepID=SXY_ECOLI
yccR; hypothetical protein
Transcriptional coactivator for CRP {ECO:0000313|EMBL:EHX33615.1}; TaxID=868192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC12B.;"
L3_060_256G1_scaffold_176_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5276..7438)
DNA (2163bp) protein (721aa)
Inner membrane protein yccS n=10 Tax=Escherichia coli RepID=H1BW47_ECOLX
hypothetical protein
Membrane protein family {ECO:0000313|EMBL:ESA71306.1}; TaxID=1268975 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 110957.;"
L3_060_256G1_scaffold_176_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7448..7894)
DNA (447bp) protein (149aa)
Inner membrane protein YccF n=741 Tax=Enterobacteriaceae RepID=YCCF_ECOLI
hypothetical protein
Inner membrane protein yccF {ECO:0000313|EMBL:KEO26927.1}; TaxID=1444212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S4_C1.;"
L3_060_256G1_scaffold_176_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8017..10071
DNA (2055bp) protein (685aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
DNA helicase IV n=82 Tax=Escherichia coli RepID=B7N3C5_ECOLU
helD; DNA helicase IV
L3_060_256G1_scaffold_176_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10103..10561)
DNA (459bp) protein (153aa)
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Methylglyoxal synthase n=72 Tax=Escherichia coli RepID=MGSA_ECOLU
L3_060_256G1_scaffold_176_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10657..11319)
DNA (663bp) protein (221aa)
UPF0319 protein YccT n=1290 Tax=Enterobacteriaceae RepID=YCCT_ECO24
hypothetical protein
UPF0319 protein YccT {ECO:0000256|HAMAP-Rule:MF_00789}; Flags: Precursor;; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
L3_060_256G1_scaffold_176_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11492..11905
DNA (414bp) protein (138aa)
Uncharacterized protein yccU n=314 Tax=Escherichia coli RepID=E2QJG9_ECOLX
yccU; putative CoA-binding protein
Uncharacterized protein {ECO:0000313|EMBL:KJH09595.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_060_256G1_scaffold_176_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11950..12267)
DNA (318bp) protein (106aa)
Heat shock protein HspQ n=1422 Tax=Enterobacteriaceae RepID=HSPQ_ECO27
heat shock protein HspQ
Heat shock protein HspQ {ECO:0000256|HAMAP-Rule:MF_01194, ECO:0000256|SAAS:SAAS00016449}; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
L3_060_256G1_scaffold_176_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12325..13500)
DNA (1176bp) protein (392aa)
Ribosomal RNA large subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01857, ECO:0000256|SAAS:SAAS00011825}; EC=2.1.1.191 {ECO:0000256|HAMAP-Rule:MF_01857, ECO:0000256|SAAS:SAAS00011815};; 23S rRNA m5C1962 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01857}; rRNA (cytosine-C(5)-)-methyltransferase RlmI {ECO:0000256|HAMAP-Rule:MF_01857}; TaxID=216592 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O44:H18 (strain 042 / EAEC).;"
Ribosomal RNA large subunit methyltransferase I n=63 Tax=Escherichia coli RepID=L2UBZ4_ECOLX
hypothetical protein
L3_060_256G1_scaffold_176_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13610..13888
DNA (279bp) protein (93aa)
yccX; acylphosphatase (EC:3.6.1.7)
Acylphosphatase {ECO:0000256|HAMAP-Rule:MF_01450, ECO:0000256|RuleBase:RU000553}; EC=3.6.1.7 {ECO:0000256|HAMAP-Rule:MF_01450, ECO:0000256|RuleBase:RU000553};; Acylphosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_01450}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
Acylphosphatase n=93 Tax=Escherichia coli RepID=B7N3D1_ECOLU
L3_060_256G1_scaffold_176_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13885..14271)
DNA (387bp) protein (129aa)
Sulfurtransferase {ECO:0000256|PIRNR:PIRNR006223}; EC=2.8.1.- {ECO:0000256|PIRNR:PIRNR006223};; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
Sulfurtransferase n=134 Tax=Enterobacteriaceae RepID=J7QZK9_ECOLX
yccK; sulfur transfer protein TusE
L3_060_256G1_scaffold_176_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14305..14964)
DNA (660bp) protein (220aa)
Inner membrane protein YccA n=886 Tax=Enterobacteriaceae RepID=YCCA_ECOL6
hypothetical protein
Modulator of FtsH protease YccA {ECO:0000313|EMBL:AKA89951.1}; TaxID=941323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli VR50.;"
L3_060_256G1_scaffold_176_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15685..16803
DNA (1119bp) protein (373aa)
hydrogenase (NiFe) small subunit HydA (EC:1.12.99.6)
Hydrogenase-1 small chain {ECO:0000313|EMBL:EHU26701.1}; EC=1.12.99.6 {ECO:0000313|EMBL:EHU26701.1};; TaxID=868136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1D.;"
Hydrogenase-1 small chain n=824 Tax=Enterobacteriaceae RepID=MBHS_ECOL6
L3_060_256G1_scaffold_176_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16800..18593
DNA (1794bp) protein (598aa)
hyaB; hydrogenase 1 large subunit (EC:1.12.99.6)
Membrane-bound hydrogenase 1 large subunit {ECO:0000313|EMBL:EFJ75634.1}; EC=1.12.99.6 {ECO:0000313|EMBL:EFJ75634.1};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Hydrogenase 1, large subunit n=84 Tax=Escherichia coli RepID=B7N3D6_ECOLU
L3_060_256G1_scaffold_176_20
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18612..19319
DNA (708bp) protein (236aa)
Ni/Fe-hydrogenase 1 B-type cytochrome subunit n=263 Tax=Enterobacteriaceae RepID=E2QJH7_ECOLX
hyac; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
Hydrogenase 1 b-type cytochrome subunit,Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit,hydrogenase 1 b-type cytochrome subunit,Cytochrome b,Ni/Fe-hydrogenase, b-type cytochrome subunit,Cytochr... {ECO:0000313|EMBL:CDX06260.1}; TaxID=623 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri.;"
L3_060_256G1_scaffold_176_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19316..19903
DNA (588bp) protein (196aa)
hyaD; hydrogenase 1 maturation protease (EC:3.4.24.-)
Hydrogenase expression/formation protein {ECO:0000313|EMBL:EFJ75636.1}; EC=3.4.23.- {ECO:0000313|EMBL:EFJ75636.1};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Protein involved in processing of HyaA and HyaB proteins n=74 Tax=Escherichia coli RepID=B7N3D8_ECOLU
L3_060_256G1_scaffold_176_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19900..20298
DNA (399bp) protein (133aa)
Hydrogenase-1 operon protein HyaE n=435 Tax=Enterobacteriaceae RepID=HYAE_ECOLI
hydrogenase-1 operon protein HyaE
Hydrogenase-1 operon protein hyaE {ECO:0000313|EMBL:ELC10967.1}; TaxID=1169330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE10.;"
L3_060_256G1_scaffold_176_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20295..21152
DNA (858bp) protein (286aa)
Protein involved in nickel incorporation into hydrogenase-1 proteins n=77 Tax=Escherichia coli RepID=B7N3E0_ECOLU
hyaF; hydrogenase-1 operon protein
Protein involved in nickel incorporation into hydrogenase-1 proteins {ECO:0000313|EMBL:CAR12376.1}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
L3_060_256G1_scaffold_176_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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21286..22830
DNA (1545bp) protein (515aa)
Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:CBG33885.1}; EC=1.10.3.- {ECO:0000313|EMBL:CBG33885.1};; TaxID=216592 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O44:H18 (strain 042 / EAEC).;"
Cytochrome bd-II oxidase, subunit I n=74 Tax=Escherichia coli RepID=B7N3E1_ECOLU
appC; cytochrome bd-II oxidase, subunit I
L3_060_256G1_scaffold_176_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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22842..23978
DNA (1137bp) protein (379aa)
appB; cytochrome bd-II oxidase subunit 2 (EC:1.10.3.-)
Cytochrome bd-II oxidase, subunit II n=98 Tax=Escherichia coli RepID=B7N3E2_ECOLU
Cytochrome bd-II oxidase subunit 2 {ECO:0000313|EMBL:EQO65524.1}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
L3_060_256G1_scaffold_176_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23991..24083
DNA (93bp) protein (31aa)
Putative cytochrome bd-II ubiquinol oxidase subunit AppX n=621 Tax=Enterobacteriaceae RepID=APPX_ECOLI
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EQY27193.1}; TaxID=1281218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3212-1.;"
L3_060_256G1_scaffold_176_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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24163..25473
DNA (1311bp) protein (437aa)
appA; periplasmic AppA protein [includes: phosphoanhydrid phosphohydrolase and 4-phytase] (EC:3.1.3.26 3.1.3.2)
Histidine acid phosphatase n=70 Tax=Escherichia coli RepID=D7X269_ECOLX
Histidine acid phosphatase {ECO:0000313|EMBL:EFJ75641.1}; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
L3_060_256G1_scaffold_176_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25959..26171
DNA (213bp) protein (71aa)
Cold shock-like protein CspG n=1342 Tax=Enterobacteriaceae RepID=CSPG_ECO57
cspG; putative cold shock protein, cold-inducible
DNA-binding transcriptional regulator CspG {ECO:0000313|EMBL:BAI29881.1}; TaxID=585395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O103:H2 (strain 12009 / EHEC).;"
L3_060_256G1_scaffold_176_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26565..26738
DNA (174bp) protein (58aa)
Protein GnsA n=1177 Tax=Enterobacteriaceae RepID=GNSA_ECOL6
GnsB protein
GnsA/GnsB family protein {ECO:0000313|EMBL:KEO36205.1}; TaxID=1444163 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-250-04_S3_C2.;"
L3_060_256G1_scaffold_176_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26787..27860)
DNA (1074bp) protein (358aa)
Iron-sulfur cluster binding protein YccM n=82 Tax=Escherichia coli RepID=D6IM59_ECOLX
yccM; putative 4Fe-4S membrane protein
4Fe-4S membrane protein {ECO:0000313|EMBL:EQX89241.1}; TaxID=1281213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3200-1.;"
Displaying items 1-30 of 118 in total

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