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L3_060_256G1_scaffold_193

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_193_1
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

58..456
DNA (399bp) protein (133aa)
Helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AEY7_9FIRM
Helix-turn-helix protein {ECO:0000313|EMBL:CCX40434.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
hypothetical protein
L3_060_256G1_scaffold_193_2
unknown

Not on your lists

comp(479..586)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_060_256G1_scaffold_193_3
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1655..2887
DNA (1233bp) protein (411aa)
SAP domain protein (Fragment) n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NNY5_9FIRM
SAP domain protein {ECO:0000313|EMBL:EEF95088.1}; Flags: Fragment;; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
hypothetical protein
L3_060_256G1_scaffold_193_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2901..3479
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YSE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56143.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_060_256G1_scaffold_193_5
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3476..4939
DNA (1464bp) protein (488aa)
Putative site-specific recombinase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KP73_OSCVS
putative site-specific recombinase
Putative site-specific recombinase {ECO:0000313|EMBL:BAK99386.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_060_256G1_scaffold_193_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5024..5524)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C787_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55907.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
CotJB protein
L3_060_256G1_scaffold_193_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5770..7758)
DNA (1989bp) protein (663aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C780_9FIRM
L3_060_256G1_scaffold_193_8
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7819..8511)
DNA (693bp) protein (231aa)
Sporulation protein YunB n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C778_9FIRM
Sporulation protein YunB {ECO:0000313|EMBL:EHO35665.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
sporulation protein YunB
L3_060_256G1_scaffold_193_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8562..9815)
DNA (1254bp) protein (418aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C777_9FIRM
Aluminum resistance protein {ECO:0000313|EMBL:KGF56029.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
aluminum resistance family protein
L3_060_256G1_scaffold_193_10
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9855..10853)
DNA (999bp) protein (333aa)
M42 glutamyl aminopeptidase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUX4_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EDN00175.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
peptidase family protein
L3_060_256G1_scaffold_193_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10870..11895)
DNA (1026bp) protein (342aa)
endoglucanase M (EC:3.2.1.4)
M42 glutamyl aminopeptidase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUX5_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EDN00176.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_060_256G1_scaffold_193_12
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11889..12923)
DNA (1035bp) protein (345aa)
M42 glutamyl aminopeptidase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUX6_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EDN00177.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
peptidase M42
L3_060_256G1_scaffold_193_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12972..14351)
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNT5_9FIRM
L3_060_256G1_scaffold_193_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14972..15346)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T7N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68210.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_060_256G1_scaffold_193_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15606..16334)
DNA (729bp) protein (243aa)
Probable transcriptional regulatory protein HMPREF0372_00061 n=3 Tax=Clostridiales RepID=G9YKQ1_9FIRM
Probable transcriptional regulatory protein HMPREF9460_01490 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_060_256G1_scaffold_193_16
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16450..17244)
DNA (795bp) protein (265aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Clostridiales RepID=G9YKQ2_9FIRM
hypothetical protein
L3_060_256G1_scaffold_193_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17231..17947)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YKQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM55372.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_060_256G1_scaffold_193_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18017..18229)
DNA (213bp) protein (71aa)
Hydrid cluster protein-associated redox disulfide domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NV08_9FIRM
Hydrid cluster protein-associated redox disulfide domain protein {ECO:0000313|EMBL:EDN00209.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_060_256G1_scaffold_193_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18553..18834)
DNA (282bp) protein (94aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YKQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56019.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_060_256G1_scaffold_193_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18913..19548)
DNA (636bp) protein (212aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EDN00212.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EDN00212.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
RNA polymerase factor sigma-70 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NV10_9FIRM
putative RNA polymerase sigma factor
L3_060_256G1_scaffold_193_21
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19636..20988)
DNA (1353bp) protein (451aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NV12_9FIRM
L3_060_256G1_scaffold_193_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21048..22112)
DNA (1065bp) protein (355aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YKQ9_9FIRM
L3_060_256G1_scaffold_193_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22161..22763)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ruvA; Holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Clostridiales RepID=G9YKR0_9FIRM
L3_060_256G1_scaffold_193_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22787..23323)
DNA (537bp) protein (179aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Clostridiales RepID=G9YKR1_9FIRM
L3_060_256G1_scaffold_193_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23614..24492)
DNA (879bp) protein (293aa)
Tyrosine recombinase XerC n=2 Tax=Clostridiales RepID=G9YNG0_9FIRM
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
xerD; tyrosine recombinase XerD
L3_060_256G1_scaffold_193_26
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24529..25152)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C6Z3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI79798.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_060_256G1_scaffold_193_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25446..26807)
DNA (1362bp) protein (454aa)
Six-Cys-in-45 modification radical SAM protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C758_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56010.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L3_060_256G1_scaffold_193_28
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26931..27074)
DNA (144bp) protein (48aa)
RSAM-modified six-cysteine peptide n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NV22_9FIRM
RSAM-modified six-cysteine peptide {ECO:0000313|EMBL:EDN00223.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_060_256G1_scaffold_193_29
unknown

Not on your lists

comp(27143..27565)
DNA (423bp) protein (141aa)

This feature has no annotations

L3_060_256G1_scaffold_193_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27686..28009)
DNA (324bp) protein (108aa)
Preprotein translocase, YajC subunit n=2 Tax=Clostridiales RepID=H1C755_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56007.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
Displaying items 1-30 of 86 in total

View Taxonomy