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L3_060_256G1_scaffold_211

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_211_1
unknown

Not on your lists

110..382
DNA (273bp) protein (91aa)

This feature has no annotations

L3_060_256G1_scaffold_211_2
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(457..2073)
DNA (1617bp) protein (539aa)
ppaC; manganese-dependent inorganic pyrophosphatase (EC:3.6.1.1)
Manganese-dependent inorganic pyrophosphatase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6URK8_9FIRM
Manganese-dependent inorganic pyrophosphatase {ECO:0000313|EMBL:CDC73402.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_060_256G1_scaffold_211_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2326..2835
DNA (510bp) protein (170aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA77_9FIRM
L3_060_256G1_scaffold_211_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2925..4781
DNA (1857bp) protein (619aa)
Superfamily II DNA and RNA helicases (EC:3.6.1.-)
ATP-dependent RNA helicase RhlE n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA78_9FIRM
ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:EGJ47256.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_211_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4820..6160
DNA (1341bp) protein (447aa)
Butyryl-CoA:acetate CoA-transferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA79_9FIRM
Butyryl-CoA:acetate CoA-transferase {ECO:0000313|EMBL:EGJ47257.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Acetyl-CoA hydrolase
L3_060_256G1_scaffold_211_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(6228..6446)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YG65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15338.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_060_256G1_scaffold_211_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6539..6658
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47259.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_211_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6711..7220)
DNA (510bp) protein (170aa)
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAC5_9FIRM
Cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:EGJ47303.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
cobinamide adenolsyltransferase
L3_060_256G1_scaffold_211_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7320..9413)
DNA (2094bp) protein (698aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46656.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
clpE; ATP-dependent Clp protease ATP-binding subunit ClpE
L3_060_256G1_scaffold_211_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9373..9579)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46656.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
clpE; ATP-dependent Clp protease ATP-binding subunit ClpE
L3_060_256G1_scaffold_211_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9695..10417)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46657.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_211_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10453..11622)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46658.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_211_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11666..12421)
DNA (756bp) protein (252aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
truA; tRNA pseudouridine synthase TruA (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW3_9FIRM
L3_060_256G1_scaffold_211_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12677..13249
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46684.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_211_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13330..14007
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46683.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
L3_060_256G1_scaffold_211_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14051..15502
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCY5_9FIRM
histidine kinase
L3_060_256G1_scaffold_211_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15502..15780
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46680.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
excinuclease ABC subunit C
L3_060_256G1_scaffold_211_18
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


15909..16220
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZH75_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rplU; 50S ribosomal protein L21
L3_060_256G1_scaffold_211_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16224..16553
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47286.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_211_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16558..16842
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=3 Tax=Clostridiales RepID=G9YR26_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
rpmA; 50S ribosomal protein L27
L3_060_256G1_scaffold_211_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16910..17332
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47284.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted DNA-binding protein with PD1-like DNA-binding motif
L3_060_256G1_scaffold_211_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17366..18646
DNA (1281bp) protein (427aa)
GTPase Obg n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA5_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
obg; GTP-binding protein Obg
L3_060_256G1_scaffold_211_23
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18747..20984)
DNA (2238bp) protein (746aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T7G5_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:CDC69348.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_060_256G1_scaffold_211_24
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21035..21751)
DNA (717bp) protein (239aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TI00_9FIRM
pyruvate formate-lyase activating enzyme
L3_060_256G1_scaffold_211_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22019..23434)
DNA (1416bp) protein (472aa)
AGCS family alanine or glycine:cation symporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA98_9FIRM
AGCS family alanine or glycine:cation symporter {ECO:0000313|EMBL:EGJ47276.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
amino acid carrier protein
L3_060_256G1_scaffold_211_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24027..26783
DNA (2757bp) protein (919aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA99_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
secA; preprotein translocase SecA subunit
L3_060_256G1_scaffold_211_27
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26894..27439
DNA (546bp) protein (182aa)
Nitroreductase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RX47_9CLOT
Nitroreductase {ECO:0000313|EMBL:CDC49944.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Nitroreductase
L3_060_256G1_scaffold_211_28
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27540..28856)
DNA (1317bp) protein (439aa)
Acetyl-CoA hydrolase/transferase n=1 Tax=Clostridium sp. M62/1 RepID=D4CC53_9CLOT
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:EFE12799.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Acetyl-CoA hydrolase
L3_060_256G1_scaffold_211_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29045..30088)
DNA (1044bp) protein (348aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45839.1}; Flags: Fragment;; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_211_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30157..31377)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45840.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
Displaying items 1-30 of 75 in total

View Taxonomy