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L3_060_256G1_scaffold_232

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_232_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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190..612
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VZ47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO59825.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_060_256G1_scaffold_232_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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629..1693
DNA (1065bp) protein (355aa)
proline aminopeptidase (EC:3.4.-.-)
Xaa-Pro aminopeptidase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAQ4_9FIRM
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EGJ47432.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_232_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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1785..2354
DNA (570bp) protein (190aa)
Elongation factor P n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAQ5_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
efp; elongation factor P
L3_060_256G1_scaffold_232_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2597..2992
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47434.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_232_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3274..3672)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75383.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_060_256G1_scaffold_232_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3792..3962)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47245.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_232_7
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(4150..5238)
DNA (1089bp) protein (363aa)
Ribosome-binding ATPase YchF n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YG23_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
engD; GTP-dependent nucleic acid-binding protein EngD
L3_060_256G1_scaffold_232_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5291..6496)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R7FY47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL71571.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_060_256G1_scaffold_232_9
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6588..6785)
DNA (198bp) protein (66aa)
Excisionase family DNA binding domain-containing protein n=2 Tax=Clostridiales RepID=G9RSH7_9FIRM
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:CDE18640.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
Excisionase from transposon Tn916.
L3_060_256G1_scaffold_232_10
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(6800..7999)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SFY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45691.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
DNA segregation ATPase FtsK/SpoIIIE and related proteins
L3_060_256G1_scaffold_232_11
unknown

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comp(8030..8653)
DNA (624bp) protein (208aa)

This feature has no annotations

L3_060_256G1_scaffold_232_12
unknown

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comp(8753..9022)
DNA (270bp) protein (90aa)

This feature has no annotations

L3_060_256G1_scaffold_232_13
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9232..9876)
DNA (645bp) protein (215aa)
XRE family transcriptional regulator n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8HY33_9GAMM
XRE family transcriptional regulator {ECO:0000313|EMBL:EIT68371.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
XRE family transcriptional regulator
L3_060_256G1_scaffold_232_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9880..10146)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035CD368
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDM99365.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_060_256G1_scaffold_232_15
unknown

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10285..11127
DNA (843bp) protein (281aa)

This feature has no annotations

L3_060_256G1_scaffold_232_16
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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11168..11869
DNA (702bp) protein (234aa)
Metallophosphoesterase n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0RY22_BUTPB
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ADL34977.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_060_256G1_scaffold_232_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11884..12417
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JLQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87186.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_060_256G1_scaffold_232_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13041..13742)
DNA (702bp) protein (234aa)
Undecaprenyl pyrophosphate synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z1Z9_9CLOT
Undecaprenyl pyrophosphate synthase {ECO:0000313|EMBL:CDD42353.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
dihydroorotate dehydrogenase
L3_060_256G1_scaffold_232_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13894..14760
DNA (867bp) protein (289aa)
23S rRNA (-C5)-methyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW7_9FIRM
23S rRNA (-C5)-methyltransferase {ECO:0000313|EMBL:EGJ46663.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_232_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14912..15757
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Cobalt/nickel transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW6_9FIRM
cobalt transporter ATP-binding subunit
L3_060_256G1_scaffold_232_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15949..16809
DNA (861bp) protein (287aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Cobalt/nickel transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW5_9FIRM
putative cobalt ABC transporter ATP-binding protein
L3_060_256G1_scaffold_232_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16810..17619
DNA (810bp) protein (270aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCW4_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative cobalt ABC transporter permease protein
L3_060_256G1_scaffold_232_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17663..18835
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46685.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_232_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18832..19152
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46686.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_232_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19276..20592
DNA (1317bp) protein (439aa)
cca; tRNA nucleotidyltransferase (EC:2.7.7.-)
tRNA nucleotidyltransferase (CCA-adding enzyme) n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD02_9FIRM
tRNA nucleotidyltransferase (CCA-adding enzyme) {ECO:0000313|EMBL:EGJ46698.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_256G1_scaffold_232_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20618..20965)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45446.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Smr domain-containing protein
L3_060_256G1_scaffold_232_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20955..21548)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45447.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_256G1_scaffold_232_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21705..23141)
DNA (1437bp) protein (479aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pyk; Pyk (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHH4_9FIRM
L3_060_256G1_scaffold_232_29
unknown

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comp(23365..23769)
DNA (405bp) protein (135aa)

This feature has no annotations

L3_060_256G1_scaffold_232_30
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24045..24953
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RLT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49868.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
cation diffusion facilitator family transporter
Displaying items 1-30 of 80 in total

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