ggKbase home page

L3_060_256G1_scaffold_236

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_236_1
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(251..553)
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31082.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
type III secretion exporter
L3_060_256G1_scaffold_236_2
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(540..1958)
DNA (1419bp) protein (473aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31083.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_060_256G1_scaffold_236_3
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2048..4141
DNA (2094bp) protein (698aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK50_9FIRM
chemotaxis protein CheA
L3_060_256G1_scaffold_236_4
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4167..4634
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31085.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
chemotaxis protein CheW
L3_060_256G1_scaffold_236_5
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4667..5479
DNA (813bp) protein (271aa)
chemotaxis protein CheR (EC:2.1.1.80)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31086.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_060_256G1_scaffold_236_6
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5569..6624
DNA (1056bp) protein (352aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK53_9FIRM
L3_060_256G1_scaffold_236_7
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6719..7033
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31088.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
L3_060_256G1_scaffold_236_8
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7036..7500
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31089.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
FlgN family protein
L3_060_256G1_scaffold_236_9
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7524..9104
DNA (1581bp) protein (527aa)
Flagellar hook-associated protein FlgK n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK56_9FIRM
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:EGN31090.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
flagellar hook-associated protein FlgK
L3_060_256G1_scaffold_236_10
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9118..10152
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31091.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Flagellin and related hook-associated protein-like protein
L3_060_256G1_scaffold_236_11
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10188..10793
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31092.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_060_256G1_scaffold_236_12
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10829..11272
DNA (444bp) protein (148aa)
Flagellar assembly factor FliW n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK59_9FIRM
Flagellar assembly factor FliW {ECO:0000256|HAMAP-Rule:MF_01185}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_060_256G1_scaffold_236_13
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11278..11499
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31094.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
carbon storage regulator CsrA
L3_060_256G1_scaffold_236_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11573..13828)
DNA (2256bp) protein (752aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79551.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_060_256G1_scaffold_236_15
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13841..14071)
DNA (231bp) protein (77aa)
Phosphotransferase system HPr-related proteins n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTL3_9FIRM
Phosphotransferase system HPr-related proteins {ECO:0000313|EMBL:CCY33113.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Phosphotransferase system, HPr-related proteins
L3_060_256G1_scaffold_236_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14088..15659)
DNA (1572bp) protein (524aa)
Cellobiose phosphorylase (EC:3.2.1.40)
Cellobiose phosphorylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1M3_9FIRM
Cellobiose phosphorylase {ECO:0000313|EMBL:CCY97653.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_060_256G1_scaffold_236_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15647..17011)
DNA (1365bp) protein (455aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N6Y6_9FIRM
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:CCY97654.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_060_256G1_scaffold_236_18
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17176..18225
DNA (1050bp) protein (350aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N0W0_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CCY97655.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
AraC-type DNA-binding domain-containing proteins
L3_060_256G1_scaffold_236_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18456..19175)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6E1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76474.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_060_256G1_scaffold_236_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19564..21516)
DNA (1953bp) protein (651aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JU58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49459.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats
L3_060_256G1_scaffold_236_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21519..22043)
DNA (525bp) protein (175aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BTN9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49460.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RNA polymerase sigma factor, sigma-70 family
L3_060_256G1_scaffold_236_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22197..24464)
DNA (2268bp) protein (756aa)
Aconitase A (EC:4.2.1.3)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B6E5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18156.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_060_256G1_scaffold_236_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24553..25146)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6E6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76479.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
FOG: FHA domain
L3_060_256G1_scaffold_236_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25238..26062)
DNA (825bp) protein (275aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5UDW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67047.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterized protein, putative amidase
L3_060_256G1_scaffold_236_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26078..26947)
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BSS6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18159.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hydrolase
L3_060_256G1_scaffold_236_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26975..28339)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6E9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76482.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_060_256G1_scaffold_236_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28508..29416
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B6F0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76483.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
AraC-type DNA-binding domain-containing proteins
L3_060_256G1_scaffold_236_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29494..30843)
DNA (1350bp) protein (450aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMT9_9FIRM
L3_060_256G1_scaffold_236_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30963..31739)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UDW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67042.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_060_256G1_scaffold_236_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32116..32358
DNA (243bp) protein (81aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5U7C5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49469.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 71 in total

View Taxonomy