ggKbase home page

L3_060_256G1_scaffold_279

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_279_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..916
DNA (915bp) protein (305aa)
Uncharacterized protein n=37 Tax=Escherichia coli RepID=L3U360_ECOLX
putative adhesin/invasin-like protein
Putative adhesin/invasin-like protein {ECO:0000313|EMBL:CAR11748.1}; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
L3_060_256G1_scaffold_279_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

970..1392
DNA (423bp) protein (141aa)
Uncharacterized protein n=80 Tax=Escherichia coli RepID=B7N946_ECOLU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESA81778.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_060_256G1_scaffold_279_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1389..1592
DNA (204bp) protein (68aa)
Uncharacterized protein n=167 Tax=Escherichia coli RepID=B7N945_ECOLU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFK18173.1}; TaxID=749527 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain MS 21-1).;"
L3_060_256G1_scaffold_279_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1596..2003)
DNA (408bp) protein (136aa)
HTH-type transcriptional regulator CueR n=476 Tax=Escherichia RepID=CUER_ECO57
ybbI; DNA-binding transcriptional regulator CueR
HTH-type transcriptional regulator cueR {ECO:0000313|EMBL:CDK44727.1}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
L3_060_256G1_scaffold_279_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2000..3175)
DNA (1176bp) protein (392aa)
Membrane spanning export protein n=353 Tax=Escherichia RepID=B5Z401_ECO5E
membrane spanning export protein
Hemolysin D {ECO:0000313|EMBL:EZD89485.1}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
L3_060_256G1_scaffold_279_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3172..5334)
DNA (2163bp) protein (721aa)
siiBA; type I secretion membrane protein, ATP binding protein, protein export (EC:3.6.3.43)
Type I secretion membrane protein, ATP binding protein, protein export n=72 Tax=Escherichia coli RepID=B7N942_ECOLU
Type I secretion system ATPase {ECO:0000313|EMBL:ESA81774.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_060_256G1_scaffold_279_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5338..26115)
DNA (20778bp) protein (6926aa)
Uncharacterized protein n=5 Tax=Escherichia coli RepID=L3H0V1_ECOLX
siiEA; adhesin for cattle intestine colonization
Type 1 secretion target domain protein {ECO:0000313|EMBL:ESA81773.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_060_256G1_scaffold_279_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26224..27579)
DNA (1356bp) protein (452aa)
Outer membrane transport protein, type I secretion n=72 Tax=Escherichia coli RepID=B7N940_ECOLU
siiCA; outer membrane transport protein, type I secretion
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ESA81772.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_060_256G1_scaffold_279_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27917..29209)
DNA (1293bp) protein (431aa)
Amino acid permease family protein n=262 Tax=Escherichia coli RepID=B5Z3Z7_ECO5E
amino acid permease-associated region
Inner membrane transporter YbaT {ECO:0000313|EMBL:EQY90939.1}; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
L3_060_256G1_scaffold_279_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29212..30144)
DNA (933bp) protein (311aa)
glsA1; glutaminase 1 (EC:3.5.1.2)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
Glutaminase n=108 Tax=Escherichia coli RepID=B7N938_ECOLU
L3_060_256G1_scaffold_279_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30407..32911
DNA (2505bp) protein (835aa)
Copper transporter {ECO:0000313|EMBL:CAR11738.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CAR11738.1};; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
copA; copper exporting ATPase (EC:3.6.3.4)
Copper transporter n=72 Tax=Escherichia coli RepID=B7N937_ECOLU
L3_060_256G1_scaffold_279_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33083..33877
DNA (795bp) protein (265aa)
Uncharacterized protein n=84 Tax=Escherichia coli RepID=B7N936_ECOLU
ybaP; hypothetical protein
GumN protein {ECO:0000313|EMBL:ESA67066.1}; TaxID=1268975 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 110957.;"
L3_060_256G1_scaffold_279_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34081..34560
DNA (480bp) protein (160aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK n=650 Tax=Enterobacteriaceae RepID=YBAK_ECOLI
ybaK; hypothetical protein
L3_060_256G1_scaffold_279_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34597..36249)
DNA (1653bp) protein (551aa)
Bifunctional UDP-sugar hydrolase and 5'-nucleotidase {ECO:0000313|EMBL:CAR11734.1}; EC=3.6.1.45 {ECO:0000313|EMBL:CAR11734.1};; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic (EC:3.6.1.45)
Bifunctional UDP-sugar hydrolase and 5'-nucleotidase n=74 Tax=Escherichia coli RepID=B7N933_ECOLU
L3_060_256G1_scaffold_279_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36467..37687
DNA (1221bp) protein (407aa)
Fosmidomycin resistance protein n=657 Tax=Enterobacteriaceae RepID=C3TL77_ECOLX
fosmidomycin efflux system
Fosmidomycin resistance protein {ECO:0000313|EMBL:AAG54828.1}; TaxID=83334 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:H7.;"
L3_060_256G1_scaffold_279_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37925..39601
DNA (1677bp) protein (559aa)
Cation:proton antiport protein n=127 Tax=Escherichia coli RepID=D6IL78_ECOLX
Inner membrane protein ybaL {ECO:0000313|EMBL:EHP67873.1}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
ybaL; Potassium/proton antiporter RosB
L3_060_256G1_scaffold_279_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39731..41035)
DNA (1305bp) protein (435aa)
gsk; inosine-guanosine kinase (EC:2.7.1.73)
Inosine-guanosine kinase n=1298 Tax=Enterobacteriaceae RepID=INGK_ECO57
Kinase, PfkB family {ECO:0000313|EMBL:EFJ71807.1}; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
L3_060_256G1_scaffold_279_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41187..42146
DNA (960bp) protein (320aa)
Acetyl esterase {ECO:0000256|HAMAP-Rule:MF_01958}; EC=3.1.1.- {ECO:0000256|HAMAP-Rule:MF_01958};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
Acetyl esterase n=76 Tax=Escherichia coli RepID=AES_ECOLU
aes; acetyl esterase
L3_060_256G1_scaffold_279_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42143..43105)
DNA (963bp) protein (321aa)
hemH; ferrochelatase (EC:4.99.1.1)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=749531 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 69-1.;"
Ferrochelatase n=137 Tax=Escherichia coli RepID=HEMH_ECOHS
L3_060_256G1_scaffold_279_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43237..43881)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1182699 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE100.;"
Adenylate kinase n=1097 Tax=Enterobacteriaceae RepID=KAD_ECO24
adk; adenylate kinase
L3_060_256G1_scaffold_279_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44062..45936)
DNA (1875bp) protein (625aa)
Chaperone protein HtpG n=884 Tax=Enterobacteriaceae RepID=HTPG_ECO57
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1444163 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-250-04_S3_C2.;"
heat shock protein HtpG
L3_060_256G1_scaffold_279_22
Escherichia albertii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46046..46651)
DNA (606bp) protein (202aa)
Recombination protein RecR n=76 Tax=Escherichia RepID=RECR_ECOLU
recR; recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1440052 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia albertii KF1.;"
L3_060_256G1_scaffold_279_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46651..46980)
DNA (330bp) protein (110aa)
Nucleoid-associated protein YbaB n=1 Tax=Escherichia coli (strain UTI89 / UPEC) RepID=Q1RF64_ECOUT
hypothetical protein
Nucleoid-associated protein YbaB {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=868161 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC6B.;"
L3_060_256G1_scaffold_279_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47033..48964)
DNA (1932bp) protein (644aa)
DNA polymerase III/DNA elongation factor III, tau and gamma subunits {ECO:0000313|EMBL:CAR11724.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CAR11724.1};; TaxID=585056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC).;"
dnaX; DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III/DNA elongation factor III, tau and gamma subunits n=71 Tax=Escherichia coli RepID=B7N923_ECOLU
L3_060_256G1_scaffold_279_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49093..49644)
DNA (552bp) protein (184aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=796392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 79-10.;"
Adenine phosphoribosyltransferase n=1131 Tax=Enterobacteriaceae RepID=APT_ECO24
L3_060_256G1_scaffold_279_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49797..50174)
DNA (378bp) protein (126aa)
Inner membrane protein YbaN n=978 Tax=Enterobacteriaceae RepID=YBAN_ECO57
inner membrane protein YbaN
Inner membrane protein ybaN {ECO:0000313|EMBL:EKJ27053.1}; TaxID=1005550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli EC1865.;"
L3_060_256G1_scaffold_279_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50244..50771
DNA (528bp) protein (176aa)
Primosomal replication protein N n=80 Tax=Escherichia coli RepID=B7N920_ECOLU
priC; primosomal replication protein N''
Primosomal replication protein N'' {ECO:0000313|EMBL:EGI52228.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
L3_060_256G1_scaffold_279_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50785..50949
DNA (165bp) protein (55aa)
Uncharacterized protein n=349 Tax=Enterobacteriaceae RepID=B5Z3X6_ECO5E
ybaM; hypothetical protein
Putative inner membrane protein {ECO:0000313|EMBL:AJA24456.1}; TaxID=1330457 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:H7 str. SS52.;"
L3_060_256G1_scaffold_279_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50988..54350)
DNA (3363bp) protein (1121aa)
Mechanosensitive channel protein n=350 Tax=Escherichia coli RepID=C3TLE7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:AAG54814.1}; TaxID=83334 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:H7.;"
kefA; potassium efflux system KefA
L3_060_256G1_scaffold_279_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54478..55125)
DNA (648bp) protein (216aa)
DNA-binding transcriptional repressor n=102 Tax=Escherichia coli RepID=B7N917_ECOLU
acrR; acrAB operon repressor
HTH-type transcriptional regulator AcrR {ECO:0000313|EMBL:EHP67858.1}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
Displaying items 1-30 of 143 in total

View Taxonomy