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L3_060_256G1_scaffold_316

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_316_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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336..1592
DNA (1257bp) protein (419aa)
processing peptidase (EC:3.4.24.64)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NT22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00585.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_060_256G1_scaffold_316_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2058..3065)
DNA (1008bp) protein (336aa)
Putative DNA replication protein DnaC n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPZ8_9FIRM
Putative DNA replication protein DnaC {ECO:0000313|EMBL:EHM52244.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_060_256G1_scaffold_316_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3069..4049)
DNA (981bp) protein (327aa)
DnaD and phage-associated domain-containing protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C8Y5_9FIRM
DnaD and phage-associated domain-containing protein {ECO:0000313|EMBL:EHO34976.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_060_256G1_scaffold_316_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4292..4606
DNA (315bp) protein (105aa)
Cell division protein ZapA n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR55_9FIRM
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_060_256G1_scaffold_316_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4688..6769
DNA (2082bp) protein (694aa)
Peptidase, U32 family {ECO:0000313|EMBL:EDN01550.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDN01550.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Peptidase, U32 family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR54_9FIRM
peptidase U32 family protein
L3_060_256G1_scaffold_316_6
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6803..7252
DNA (450bp) protein (150aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AYG8_9CLOT
L3_060_256G1_scaffold_316_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7268..7864
DNA (597bp) protein (199aa)
Maf-like protein maf n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR52_9FIRM
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Maf-like protein
L3_060_256G1_scaffold_316_8
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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7883..8725
DNA (843bp) protein (281aa)
Cell shape-determining protein MreC n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR51_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
mreC; putative rod shape-determining protein MreC
L3_060_256G1_scaffold_316_9
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8738..9250
DNA (513bp) protein (171aa)
Rod shape-determining protein MreD n=3 Tax=Clostridiales RepID=G9YQ06_9FIRM
Rod shape-determining protein MreD {ECO:0000313|EMBL:ERI71209.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_060_256G1_scaffold_316_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9305..11536
DNA (2232bp) protein (744aa)
Penicillin-binding protein 2 n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C8Z2_9FIRM
Penicillin-binding protein 2 {ECO:0000313|EMBL:EHO34983.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
pbpA; penicillin-binding protein A
L3_060_256G1_scaffold_316_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11573..13471
DNA (1899bp) protein (633aa)
putative glycoside hydrolase (EC:3.2.1.-)
Alpha amylase, catalytic domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CVD2_9CLOT
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:ERI71211.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_060_256G1_scaffold_316_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13731..15800
DNA (2070bp) protein (690aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CAV9_9FIRM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EHO34269.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
recJ; single-stranded-DNA-specific exonuclease RecJ
L3_060_256G1_scaffold_316_13
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15834..18074
DNA (2241bp) protein (747aa)
GTP diphosphokinase {ECO:0000313|EMBL:EDN01527.1}; EC=2.7.6.5 {ECO:0000313|EMBL:EDN01527.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP diphosphokinase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR31_9FIRM
L3_060_256G1_scaffold_316_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18150..19358
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01529.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Predicted ATP-grasp enzyme
L3_060_256G1_scaffold_316_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19378..20094
DNA (717bp) protein (239aa)
Aspartate racemase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CAW4_9FIRM
Aspartate racemase {ECO:0000313|EMBL:EHO34274.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
aspartate racemase
L3_060_256G1_scaffold_316_16
unknown

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comp(20166..20348)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_060_256G1_scaffold_316_17
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20349..20591)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CIP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA75505.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_060_256G1_scaffold_316_18
Mogibacterium sp. CM50, Mogibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20593..20796)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Mogibacterium sp. CM50 RepID=J5UKQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJU23274.1}; TaxID=936375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis; Mogibacterium.;" source="Mogibacterium sp. CM50.;"
hypothetical protein
L3_060_256G1_scaffold_316_19
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20819..21883)
DNA (1065bp) protein (355aa)
Conserved domain protein n=1 Tax=Caloramator australicus RC3 RepID=G0V3P3_9CLOT
Conserved domain protein {ECO:0000313|EMBL:CCC57733.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
hypothetical protein
L3_060_256G1_scaffold_316_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22198..23124)
DNA (927bp) protein (309aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
selD; selenide, water dikinase (EC:2.7.9.3)
Selenide, water dikinase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P167_9FIRM
L3_060_256G1_scaffold_316_21
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23363..24304
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CLS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76545.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
transcriptional regulator
L3_060_256G1_scaffold_316_22
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24353..25435)
DNA (1083bp) protein (361aa)
Basic membrane lipoprotein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAE9_CLOSW
Membrane protein {ECO:0000313|EMBL:KEZ89394.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
basic membrane lipoprotein
L3_060_256G1_scaffold_316_23
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25550..26620)
DNA (1071bp) protein (357aa)
Basic membrane lipoprotein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAE9_CLOSW
Membrane protein {ECO:0000313|EMBL:KEZ89394.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
basic membrane lipoprotein
L3_060_256G1_scaffold_316_24
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27143..29716)
DNA (2574bp) protein (858aa)
Selenium-dependent molybdenum hydroxylase 1 n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5T4S4_9CLOT
Selenium-dependent molybdenum hydroxylase 1 {ECO:0000313|EMBL:CCZ60498.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
hypothetical protein
L3_060_256G1_scaffold_316_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30068..31327
DNA (1260bp) protein (420aa)
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:EDN00590.1}; EC=4.3.1.15 {ECO:0000313|EMBL:EDN00590.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Diaminopropionate ammonia-lyase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NT27_9FIRM
hypothetical protein
L3_060_256G1_scaffold_316_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31453..32865
DNA (1413bp) protein (471aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=H1CEI4_9FIRM
M20/DapE family protein YgeY {ECO:0000313|EMBL:KGF56743.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ArgE; acetylornithine deacetylase
L3_060_256G1_scaffold_316_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33007..34206
DNA (1200bp) protein (400aa)
Putative carbamoyltransferase YgeW n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YPT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56742.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
probable carbamoyltransferase YgeW
L3_060_256G1_scaffold_316_28
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34507..35448
DNA (942bp) protein (314aa)
Carbamate kinase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NT31_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ArcC; carbamate kinase
L3_060_256G1_scaffold_316_29
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35544..35918
DNA (375bp) protein (125aa)
Putative endoribonuclease L-PSP n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MBL0_9FIRM
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EDR98444.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
hypothetical protein
L3_060_256G1_scaffold_316_30
unknown

Not on your lists

comp(35858..36001)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying items 1-30 of 90 in total

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