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L3_060_256G1_scaffold_346

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_256G1_scaffold_346_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(79..225)
DNA (147bp) protein (49aa)
Predicted transcriptional regulators n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYY0_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBK99229.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(482..1009)
DNA (528bp) protein (176aa)
Predicted membrane protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYX9_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBK99228.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1234..2106)
DNA (873bp) protein (291aa)
EDD domain protein, DegV family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYX8_9FIRM
EDD domain protein, DegV family
EDD domain protein, DegV family {ECO:0000313|EMBL:CBK99227.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2115..2621)
DNA (507bp) protein (169aa)
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYX7_9FIRM
L3_060_256G1_scaffold_346_5
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2628..3461)
DNA (834bp) protein (278aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Putative pyridoxamine kinase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R899_9FIRM
hypothetical protein
L3_060_256G1_scaffold_346_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3647..3856
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYX6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99225.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4087..4407)
DNA (321bp) protein (107aa)
Plasmid stabilisation system protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KBP5_9FIRM
Plasmid stabilisation system protein.
Plasmid stabilisation system protein {ECO:0000313|EMBL:CBL02258.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_060_256G1_scaffold_346_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4404..4709)
DNA (306bp) protein (102aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H292_9FIRM
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:EEU97805.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
addiction module antitoxin, RelB/DinJ family
L3_060_256G1_scaffold_346_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4932..6002)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5C5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96906.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_060_256G1_scaffold_346_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6015..6581)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCI1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL02544.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_060_256G1_scaffold_346_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6581..8398)
DNA (1818bp) protein (606aa)
Eco57I restriction endonuclease n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5C3_9FIRM
Eco57I restriction endonuclease {ECO:0000313|EMBL:EEU96904.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
type IIG restriction enzyme/N6-adenine DNA methyltransferase of unknown recognition sequence
L3_060_256G1_scaffold_346_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8697..8999
DNA (303bp) protein (101aa)
DNA-binding helix-turn-helix protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5C2_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEU96903.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted transcriptional regulators
L3_060_256G1_scaffold_346_13
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9054..10292)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DK41_DESRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG60355.1}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
L3_060_256G1_scaffold_346_14
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10292..11119)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Bacillus cereus VD148 RepID=J8KHP0_BACCE
Uncharacterized protein {ECO:0000313|EMBL:AKG37858.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
hypothetical protein
L3_060_256G1_scaffold_346_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11188..11412)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96901.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
phage-associated protein
L3_060_256G1_scaffold_346_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11704..13347)
DNA (1644bp) protein (548aa)
60 kDa chaperonin n=5 Tax=Bacteria RepID=D4K3P3_9FIRM
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
chaperonin GroL
L3_060_256G1_scaffold_346_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13400..13684)
DNA (285bp) protein (95aa)
10 kDa chaperonin n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3P2_9FIRM
Co-chaperonin GroES (HSP10)
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14117..14530
DNA (414bp) protein (138aa)
Transcriptional regulator, MarR family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3P1_9FIRM
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CBK98134.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14527..15657
DNA (1131bp) protein (377aa)
NADH:flavin oxidoreductases, Old Yellow Enzyme family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3P0_9FIRM
NADH:flavin oxidoreductases, Old Yellow Enzyme family
NADH:flavin oxidoreductases, Old Yellow Enzyme family {ECO:0000313|EMBL:CBK98133.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15717..16208
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3N9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98132.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16311..17291)
DNA (981bp) protein (327aa)
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EEU96302.1}; EC=2.7.1.- {ECO:0000313|EMBL:EEU96302.1};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Lipid kinase, YegS/Rv2252/BmrU family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H752_9FIRM
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L3_060_256G1_scaffold_346_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17360..19663)
DNA (2304bp) protein (768aa)
ATPases with chaperone activity, ATP-binding subunit n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3N8_9FIRM
ATPases with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:CBK98131.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
ATPases with chaperone activity, ATP-binding subunit
L3_060_256G1_scaffold_346_23
unknown

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comp(19970..20209)
DNA (240bp) protein (80aa)

This feature has no annotations

L3_060_256G1_scaffold_346_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20220..20558)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3N7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98130.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20562..20819)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3N6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98129.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20816..21616)
DNA (801bp) protein (267aa)
Lyzozyme M1 (1,4-beta-N-acetylmuramidase) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3N5_9FIRM
Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Lyzozyme M1 (1,4-beta-N-acetylmuramidase) {ECO:0000313|EMBL:CBK98128.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21609..21761)
DNA (153bp) protein (51aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYQ3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99152.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_256G1_scaffold_346_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21942..22445
DNA (504bp) protein (168aa)
Type IV secretory system Conjugative DNA transfer family protein n=1 Tax=Clostridium difficile P38 RepID=T4PSB0_CLODI
Type IV secretory pathway, VirD4 components
Type IV secretory pathway, VirD4 components {ECO:0000313|EMBL:CBL26629.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_060_256G1_scaffold_346_29
unknown

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22466..22780
DNA (315bp) protein (105aa)

This feature has no annotations

L3_060_256G1_scaffold_346_30
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22799..23014
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=C7GH06_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL23609.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
Displaying items 1-30 of 94 in total

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