ggKbase home page

L3_063_000G1_scaffold_44

Search features with annotation key words

Displaying items 1-30 of 167 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_44_1
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..252)
DNA (252bp) protein (84aa)
Uncharacterized protein (Fragment) n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y1D3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD58283.1}; Flags: Fragment;; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_063_000G1_scaffold_44_2
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

477..809
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RW11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74644.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
hypothetical protein
L3_063_000G1_scaffold_44_3
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

954..1112
DNA (159bp) protein (53aa)
Rubredoxin n=4 Tax=Lachnospiraceae RepID=E9RW12_9FIRM
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
rubredoxin-type Fe(Cys)4 protein
L3_063_000G1_scaffold_44_4
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1229..3142)
DNA (1914bp) protein (638aa)
NAD+ synthetase (EC:6.3.5.1)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AM12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86528.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_063_000G1_scaffold_44_5
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3161..4042)
DNA (882bp) protein (294aa)
33 kDa chaperonin n=2 Tax=Lachnospiraceae RepID=F3AM13_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Disulfide bond chaperones of the HSP33 family
L3_063_000G1_scaffold_44_6
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4090..4851)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AM14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86530.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_063_000G1_scaffold_44_7
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4852..5688)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Z2K1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD58289.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_063_000G1_scaffold_44_8
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6091..7425
DNA (1335bp) protein (445aa)
Magnesium transporter n=3 Tax=Lachnospiraceae RepID=E9RW52_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Mg2+ transporter (mgtE)
L3_063_000G1_scaffold_44_9
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7488..8855)
DNA (1368bp) protein (456aa)
MATE efflux family protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y232_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EPD58291.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
MATE efflux family protein
L3_063_000G1_scaffold_44_10
Mannheimia haemolytica, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8999..10093)
DNA (1095bp) protein (365aa)
Transporter n=11 Tax=Pasteurella haemolytica RepID=M4XIL3_PASHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK03071.1}; TaxID=1316932 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia haemolytica M42548.;"
L3_063_000G1_scaffold_44_11
Lachnoanaerobaculum sp. ICM7, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10144..10785)
DNA (642bp) protein (214aa)
Mg2+ transporter-C, MgtC family n=1 Tax=Lachnospiraceae bacterium ICM7 RepID=J4K730_9FIRM
Mg2+ transporter-C, MgtC family {ECO:0000313|EMBL:EJP18556.1}; TaxID=936594 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. ICM7.;"
hypothetical protein
L3_063_000G1_scaffold_44_12
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10931..11791)
DNA (861bp) protein (287aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KG59_CLOPA
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:AGK98595.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_063_000G1_scaffold_44_13
Paenibacillus sp. HGF5, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11809..13470)
DNA (1662bp) protein (554aa)
ABC transporter, permease protein n=1 Tax=Paenibacillus sp. HGF5 RepID=F3MCQ5_9BACL
ABC transporter, permease protein {ECO:0000313|EMBL:EGG34936.1}; TaxID=908341 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF5.;"
binding-protein-dependent transport systems inner membrane component
L3_063_000G1_scaffold_44_14
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

comp(13538..14554)
DNA (1017bp) protein (339aa)
ABC-type spermidine/putrescine transport systems, ATPase components (EC:3.6.3.30)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SLT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ45882.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L3_063_000G1_scaffold_44_15
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14584..15651)
DNA (1068bp) protein (356aa)
Putative ABC-transporter n=1 Tax=Paenibacillus durus RepID=Q9AKT7_PAEDU
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AKG33553.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
family 1 extracellular solute-binding protein
L3_063_000G1_scaffold_44_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15965..18130
DNA (2166bp) protein (722aa)
Transcriptional regulator n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KA78_CLOPA
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGK98596.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_063_000G1_scaffold_44_17
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18242..20167)
DNA (1926bp) protein (642aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YW86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD66290.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L3_063_000G1_scaffold_44_18
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20191..20943)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AM19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86535.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L3_063_000G1_scaffold_44_19
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20944..22311)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RW56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74534.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_063_000G1_scaffold_44_20
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22529..23380
DNA (852bp) protein (284aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RW57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74535.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
AraC family transcription regulator
L3_063_000G1_scaffold_44_21
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23474..23962)
DNA (489bp) protein (163aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=2 Tax=Lachnospiraceae RepID=F3AM22_9FIRM
L3_063_000G1_scaffold_44_22
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24030..24878)
DNA (849bp) protein (283aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=2 Tax=Lachnospiraceae RepID=E9RW59_9FIRM
Thymidylate synthase {ECO:0000313|EMBL:EGC74537.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_063_000G1_scaffold_44_23
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25033..25617)
DNA (585bp) protein (195aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=S2Y1E5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD66284.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L3_063_000G1_scaffold_44_24
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25785..26342)
DNA (558bp) protein (186aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=S2YPB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD58299.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Protein of unknown function (DUF1393).
L3_063_000G1_scaffold_44_25
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26782..28188
DNA (1407bp) protein (469aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AM26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86542.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
amino acid carrier protein
L3_063_000G1_scaffold_44_26
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28353..28613)
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2YPI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86543.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Helix-turn-helix.
L3_063_000G1_scaffold_44_27
unknown

Not on your lists

28737..29045
DNA (309bp) protein (103aa)

This feature has no annotations

L3_063_000G1_scaffold_44_28
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29418..31091)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RW64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74542.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_063_000G1_scaffold_44_29
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31486..32139
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2Y1I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG85793.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
lactate utilization protein B/C
L3_063_000G1_scaffold_44_30
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32412..33035
DNA (624bp) protein (208aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2YKV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG85794.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Displaying items 1-30 of 167 in total

View Taxonomy