ggKbase home page

L3_063_000G1_scaffold_76

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_76_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(87..2009)
DNA (1923bp) protein (641aa)
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KFI42674.1}; EC=3.6.5.- {ECO:0000313|EMBL:KFI42674.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
typA; GTP-binding protein TypA (EC:2.7.7.4)
GTP-binding protein TypA/BipA n=7 Tax=Bifidobacterium RepID=E4P0S7_BIFBP
L3_063_000G1_scaffold_76_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2190..3467)
DNA (1278bp) protein (426aa)
iscS; putative cysteine desulfurase (EC:2.8.1.7)
Putative cysteine desulfurase {ECO:0000313|EMBL:AFL04180.1}; EC=2.8.1.7 {ECO:0000313|EMBL:AFL04180.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative cysteine desulfurase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH17_BIFBI
L3_063_000G1_scaffold_76_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3470..4363)
DNA (894bp) protein (298aa)
nadC; nicotinate-nucleotide diphosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EKE50543.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EKE50543.1};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSX2_BIFBI
L3_063_000G1_scaffold_76_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4497..6149)
DNA (1653bp) protein (551aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L-aspartate oxidase n=4 Tax=Bifidobacterium bifidum RepID=E3ENV4_BIFBS
nadB; L-aspartate oxidase
L3_063_000G1_scaffold_76_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6202..7482)
DNA (1281bp) protein (427aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Quinolinate synthase A n=5 Tax=Bifidobacterium RepID=I3WH14_BIFBI
nadA; quinolinate synthetase complex subunit A
L3_063_000G1_scaffold_76_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7600..8412)
DNA (813bp) protein (271aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S2_BIFBP
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:ADO52827.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_063_000G1_scaffold_76_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8586..9158)
DNA (573bp) protein (191aa)
Segregation and condensation protein B n=3 Tax=Bifidobacterium bifidum RepID=E3ENV1_BIFBS
scpB; segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_063_000G1_scaffold_76_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9255..10109)
DNA (855bp) protein (285aa)
Segregation and condensation protein A n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSW7_BIFBI
scpA; segregation and condensation protein A
Segregation and condensation protein A {ECO:0000313|EMBL:EKE50538.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_063_000G1_scaffold_76_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10146..11165)
DNA (1020bp) protein (340aa)
Chromosome partitioning protein n=5 Tax=Bifidobacterium bifidum RepID=E3ENU9_BIFBS
chromosome partitioning protein
ParA Chromosome partitioning protein {ECO:0000313|EMBL:KFI42666.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_063_000G1_scaffold_76_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11227..12195)
DNA (969bp) protein (323aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H956_BIFBI
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
integrase/recombinase
L3_063_000G1_scaffold_76_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12344..12727)
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=8 Tax=Bifidobacterium RepID=E3ENU7_BIFBS
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_063_000G1_scaffold_76_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12775..12969)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=8 Tax=Bifidobacterium RepID=E3ENU6_BIFBS
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_063_000G1_scaffold_76_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12988..13719)
DNA (732bp) protein (244aa)
Translation initiation factor IF-3 n=9 Tax=Bifidobacterium RepID=E3ENU5_BIFBS
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
infC; protein translation Initiation Factor 3
L3_063_000G1_scaffold_76_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13923..14075)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN79_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22706.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_063_000G1_scaffold_76_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14060..14245)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH03_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04166.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_063_000G1_scaffold_76_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14354..15082
DNA (729bp) protein (243aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:AFL04165.1}; EC=2.7.6.2 {ECO:0000313|EMBL:AFL04165.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Thiamine pyrophosphokinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH02_BIFBI
L3_063_000G1_scaffold_76_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15289..16344
DNA (1056bp) protein (352aa)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Gap Glyceraldehyde 3-phosphate dehydrogenase n=6 Tax=Bifidobacterium RepID=E3ENU2_BIFBS
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:EKE50527.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_063_000G1_scaffold_76_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16483..17001)
DNA (519bp) protein (173aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENU1_BIFBS
YbaK / prolyl-tRNA synthetases associated domain
L3_063_000G1_scaffold_76_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17421..18410)
DNA (990bp) protein (330aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IP46_BIFBI
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
L3_063_000G1_scaffold_76_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18641..19597
DNA (957bp) protein (319aa)
Aldose 1-epimerase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENT8_BIFBS
aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:ADO52813.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_063_000G1_scaffold_76_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19972..20340)
DNA (369bp) protein (123aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=I3WGZ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42654.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_063_000G1_scaffold_76_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20333..20974)
DNA (642bp) protein (214aa)
RNA polymerase ECF-type sigma factor n=3 Tax=Bifidobacterium RepID=E3ENT6_BIFBS
rpoE; RNA polymerase sigma-E factor
SigH RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:KFI42653.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_063_000G1_scaffold_76_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21114..22745
DNA (1632bp) protein (544aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|SAAS:SAAS00276926};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase n=3 Tax=Bifidobacterium RepID=R6GN68_9BIFI
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
L3_063_000G1_scaffold_76_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22790..23788
DNA (999bp) protein (333aa)
Cell wall biosynthesis-associated protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0Q5_BIFBP
cell wall biosynthesis-associated protein
Uncharacterized protein {ECO:0000313|EMBL:EFR49950.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_063_000G1_scaffold_76_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23867..25072)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GM17_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22694.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_063_000G1_scaffold_76_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25251..26486
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LDN7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15939.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_063_000G1_scaffold_76_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26545..27237
DNA (693bp) protein (231aa)
racD; aspartate racemase (EC:5.1.1.13)
Aspartate racemase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H933_BIFBI
Aspartate racemase {ECO:0000313|EMBL:EKF15940.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_063_000G1_scaffold_76_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27411..31073)
DNA (3663bp) protein (1221aa)
Chromosome partition protein Smc n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGY7_BIFBI
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
smc; chromosome segregation protein
L3_063_000G1_scaffold_76_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31079..32707)
DNA (1629bp) protein (543aa)
Folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M1G2_BIFBI
Folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:EKF15751.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
folC; Folylpolyglutamate synthase/dihydrofolate synthase
L3_063_000G1_scaffold_76_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32981..33082
DNA (102bp) protein (34aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HSU0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ97772.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 142 in total

View Taxonomy