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L3_063_000G1_scaffold_120

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_120_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29..349)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU98719.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_063_000G1_scaffold_120_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(423..620)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56993.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Aldo/keto reductases, related to diketogulonate reductase
L3_063_000G1_scaffold_120_3
unknown

Not on your lists

comp(626..733)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_063_000G1_scaffold_120_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(693..1163)
DNA (471bp) protein (157aa)
Diguanylate cyclase (GGDEF) domain n=2 Tax=Roseburia intestinalis RepID=D4KS31_9FIRM
diguanylate cyclase (GGDEF) domain
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL14215.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1188..1841)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS32_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09684.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_120_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1843..2697)
DNA (855bp) protein (285aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GHJ2_9FIRM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CDA56989.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_120_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2780..4126)
DNA (1347bp) protein (449aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS34_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL09686.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_120_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4128..6011)
DNA (1884bp) protein (628aa)
Predicted ATP-dependent endonuclease of the OLD family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS35_9FIRM
Predicted ATP-dependent endonuclease of the OLD family
Predicted ATP-dependent endonuclease of the OLD family {ECO:0000313|EMBL:CDA56987.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_120_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6429..7010
DNA (582bp) protein (194aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GHJ7_9FIRM
Protein of unknown function (DUF1393).
Uncharacterized protein {ECO:0000313|EMBL:CDA56986.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_120_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7348..8829)
DNA (1482bp) protein (494aa)
tRNA and rRNA cytosine-C5-methylases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3L7_9FIRM
tRNA and rRNA cytosine-C5-methylases
tRNA and rRNA cytosine-C5-methylases {ECO:0000313|EMBL:CBL14207.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8924..10063)
DNA (1140bp) protein (380aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3L6_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL14206.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10169..10303)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GF21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99571.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_063_000G1_scaffold_120_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10304..11482)
DNA (1179bp) protein (393aa)
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities (EC:2.6.1.-)
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities {ECO:0000313|EMBL:CBL14205.1}; EC=2.6.1.- {ECO:0000313|EMBL:CBL14205.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3L5_9FIRM
L3_063_000G1_scaffold_120_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11506..12990)
DNA (1485bp) protein (495aa)
Transporter, NhaC family (TC 2.A.35) n=2 Tax=Roseburia intestinalis RepID=D4L3L4_9FIRM
transporter, NhaC family (TC 2.A.35)
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EEU99569.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_063_000G1_scaffold_120_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13050..13427)
DNA (378bp) protein (126aa)
Endoribonuclease L-PSP, putative n=2 Tax=Roseburia intestinalis RepID=D4L3L3_9FIRM
endoribonuclease L-PSP, putative
Endoribonuclease L-PSP, putative {ECO:0000313|EMBL:CBL14203.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13671..14354
DNA (684bp) protein (228aa)
Uncharacterized protein conserved in bacteria n=3 Tax=Roseburia RepID=D4L3L2_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL14202.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14524..14667)
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GF16_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57642.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_120_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14703..15158)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B0D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57643.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_120_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15106..15354)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9R5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57644.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_120_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15347..18055)
DNA (2709bp) protein (903aa)
Small GTP-binding protein domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3K8_9FIRM
small GTP-binding protein domain
Small GTP-binding protein domain {ECO:0000313|EMBL:CBL14198.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18111..19142)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BEZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57646.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_120_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19159..20550)
DNA (1392bp) protein (464aa)
Mg2+ transporter (MgtE) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3K6_9FIRM
Mg2+ transporter (mgtE)
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20844..23339)
DNA (2496bp) protein (832aa)
Excinuclease ATPase subunit n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3K5_9FIRM
Excinuclease ATPase subunit
Excinuclease ATPase subunit {ECO:0000313|EMBL:CBL14195.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_120_24
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23961..25712)
DNA (1752bp) protein (584aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JEC5_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF38912.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_063_000G1_scaffold_120_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25712..27505)
DNA (1794bp) protein (598aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003183BFD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF38913.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_063_000G1_scaffold_120_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27589..28461)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07363.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_063_000G1_scaffold_120_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28575..29600)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E3DAF4
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDP20490.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
transcriptional regulator, AraC family
L3_063_000G1_scaffold_120_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29694..30152)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BV62_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08843.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_120_29
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

comp(30440..31081)
DNA (642bp) protein (214aa)
Helix-turn-helix n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N3W6_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CDF06763.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
Helix-turn-helix.
L3_063_000G1_scaffold_120_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31056..31736)
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1V1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL25213.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Displaying items 1-30 of 117 in total

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