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L3_063_000G1_scaffold_177

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_177_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(138..1991)
DNA (1854bp) protein (618aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=2 Tax=Bifidobacterium dentium RepID=D2Q9B9_BIFDB
L3_063_000G1_scaffold_177_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2199..2483
DNA (285bp) protein (95aa)
rpoZ; DNA-directed RNA polymerase omega chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
DNA-directed RNA polymerase subunit omega n=4 Tax=Bifidobacterium dentium RepID=D2Q9C0_BIFDB
L3_063_000G1_scaffold_177_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2667..3881
DNA (1215bp) protein (405aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=2 Tax=Bifidobacterium dentium RepID=E0Q7Y4_9BIFI
L3_063_000G1_scaffold_177_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3936..6167
DNA (2232bp) protein (744aa)
Putative primosomal protein N n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S686_9BIFI
Putative primosomal protein N {ECO:0000313|EMBL:ETO97850.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
priA; primosomal protein N'
L3_063_000G1_scaffold_177_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6275..6985
DNA (711bp) protein (237aa)
haloacid dehalogenase (EC:3.8.1.2)
HAD hydrolase, family IA, variant 3 n=2 Tax=Bifidobacterium dentium RepID=E0Q7Y2_9BIFI
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFM41847.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
L3_063_000G1_scaffold_177_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7064..8029
DNA (966bp) protein (322aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q9C4_BIFDB
L3_063_000G1_scaffold_177_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8215..8889)
DNA (675bp) protein (225aa)
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:EFM41845.1}; EC=3.1.3.3 {ECO:0000313|EMBL:EFM41845.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
serB1; phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase SerB n=2 Tax=Bifidobacterium dentium RepID=E0Q7Y0_9BIFI
L3_063_000G1_scaffold_177_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8961..10508
DNA (1548bp) protein (516aa)
ATPase AAA (EC:3.6.4.6)
AAA ATPase forming ring-shaped complexes n=2 Tax=Bifidobacterium dentium RepID=ARC_BIFDB
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_000G1_scaffold_177_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10554..12137
DNA (1584bp) protein (528aa)
Proteasome accessory factor PafA2 {ECO:0000313|EMBL:ETO97913.1}; EC=6.3.2.- {ECO:0000313|EMBL:ETO97913.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Proteasome accessory factor PafA2 n=2 Tax=Bifidobacterium dentium RepID=E0Q7X8_9BIFI
proteasome-associated protein
L3_063_000G1_scaffold_177_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12269..13099
DNA (831bp) protein (277aa)
inositol monophosphatase family protein (EC:3.1.3.25)
Inositol monophosphatase family protein {ECO:0000313|EMBL:ADB09414.1}; EC=3.1.3.25 {ECO:0000313|EMBL:ADB09414.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Inositol monophosphatase family protein n=2 Tax=Bifidobacterium dentium RepID=D2Q9C8_BIFDB
L3_063_000G1_scaffold_177_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13202..13393
DNA (192bp) protein (64aa)
Prokaryotic ubiquitin-like protein Pup n=3 Tax=Bifidobacterium dentium RepID=PUP_BIFDB
Ubiquitin-like protein Pup {ECO:0000313|EMBL:ETO97904.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13393..14856
DNA (1464bp) protein (488aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Pup--protein ligase n=2 Tax=Bifidobacterium dentium RepID=PAFA_BIFDB
proteasome-associated protein
L3_063_000G1_scaffold_177_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14919..15719)
DNA (801bp) protein (267aa)
2-keto-3-deoxy-6-phosphogluconate aldolase n=4 Tax=Bifidobacterium dentium RepID=D2Q9D1_BIFDB
Uncharacterized protein {ECO:0000313|EMBL:ETO97753.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
2-keto-3-deoxy-6-phosphogluconate aldolase
L3_063_000G1_scaffold_177_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15716..16075)
DNA (360bp) protein (120aa)
MarR-type transcriptional regulator n=4 Tax=Bifidobacterium dentium RepID=D2Q9D2_BIFDB
MarR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ETO97844.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_000G1_scaffold_177_15
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16222..16425)
DNA (204bp) protein (68aa)
DNA-binding protein HB1 n=10 Tax=Bifidobacterium RepID=A1A0V0_BIFAA
DNA-binding protein HU
DNA-binding protein HB1 {ECO:0000313|EMBL:KFI96733.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
L3_063_000G1_scaffold_177_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16467..18902)
DNA (2436bp) protein (812aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q9D4_BIFDB
Membrane protein, PF03706 family {ECO:0000313|EMBL:ETO97805.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19036..20490)
DNA (1455bp) protein (485aa)
purB; adenylosuccinate lyase (EC:4.2.1.2)
PurB Adenylosuccinate lyase n=2 Tax=Bifidobacterium dentium RepID=D2Q9D5_BIFDB
Adenylosuccinate lyase C-terminal domain protein {ECO:0000313|EMBL:ETO97806.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L3_063_000G1_scaffold_177_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20560..22038)
DNA (1479bp) protein (493aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7W9_9BIFI
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:ETO97776.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22519..23097)
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7W7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO97818.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
ebpS; cell surface elastin binding protein EbpS
L3_063_000G1_scaffold_177_20
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23094..24113)
DNA (1020bp) protein (340aa)
von Willebrand factor type A domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7W6_9BIFI
von Willebrand factor type A domain protein {ECO:0000313|EMBL:ETO97871.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
von Willebrand factor A
L3_063_000G1_scaffold_177_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24110..25177)
DNA (1068bp) protein (356aa)
von Willebrand factor, type A n=2 Tax=Bifidobacterium dentium RepID=D2Q9E1_BIFDB
von Willebrand factor type A domain protein {ECO:0000313|EMBL:ETO97767.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
von Willebrand factor A
L3_063_000G1_scaffold_177_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25178..25702)
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7W4_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO97894.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25699..26652)
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7W3_9BIFI
PF01882 family protein {ECO:0000313|EMBL:ETO97771.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_24
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26649..27716)
DNA (1068bp) protein (356aa)
ATPase family associated with various cellular activities (AAA) n=2 Tax=Bifidobacterium dentium RepID=E0Q7W2_9BIFI
ATPase, AAA family {ECO:0000313|EMBL:ETO97775.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
ATPase AAA
L3_063_000G1_scaffold_177_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27735..28466)
DNA (732bp) protein (244aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Uracil-DNA glycosylase n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q9E5_BIFDB
ung; uracil-DNA glycosylase
L3_063_000G1_scaffold_177_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28586..29224
DNA (639bp) protein (213aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S663_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO97866.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29507..31123
DNA (1617bp) protein (539aa)
60 kDa chaperonin n=6 Tax=Bifidobacterium RepID=D2Q9E7_BIFDB
groEL; molecular chaperone GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
L3_063_000G1_scaffold_177_28
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31263..31553)
DNA (291bp) protein (97aa)
WXG100 family type VII secretion target n=4 Tax=Bifidobacterium dentium RepID=B1S660_9BIFI
ESAT-6-like protein {ECO:0000256|RuleBase:RU362001}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L3_063_000G1_scaffold_177_29
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31636..32535
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q7V7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:ETO97772.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
L3_063_000G1_scaffold_177_30
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32540..33271
DNA (732bp) protein (244aa)
two-component response regulator (EC:3.1.1.61)
Two-component response regulator {ECO:0000313|EMBL:ADB09436.1}; EC=3.1.1.61 {ECO:0000313|EMBL:ADB09436.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
Two-component response regulator n=4 Tax=Bifidobacterium dentium RepID=D2Q9F0_BIFDB
Displaying items 1-30 of 115 in total

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