ggKbase home page

L3_063_000G1_scaffold_180

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_180_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..2147)
DNA (2145bp) protein (715aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Carbamoyl-phosphate synthase, large subunit (Fragment) n=2 Tax=Clostridium difficile RepID=T3V8Y5_CLODI
carB; carbamoyl phosphate synthase large subunit
L3_063_000G1_scaffold_180_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2200..3243)
DNA (1044bp) protein (348aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Carbamoyl-phosphate synthase small chain n=164 Tax=Clostridium difficile RepID=G6BSS3_CLODI
pyrAA2; carbamoyl phosphate synthase small subunit
L3_063_000G1_scaffold_180_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3269..3985)
DNA (717bp) protein (239aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=75 Tax=Clostridium difficile RepID=G6B9D8_CLODI
L3_063_000G1_scaffold_180_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4361..4996)
DNA (636bp) protein (212aa)
Uncharacterized protein n=169 Tax=Clostridium difficile RepID=T3G2R1_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EQG73198.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_063_000G1_scaffold_180_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5020..5934)
DNA (915bp) protein (305aa)
Nitroreductase family protein n=2 Tax=Clostridium difficile RepID=T4P522_CLODI
hypothetical protein
Nitroreductase family protein {ECO:0000313|EMBL:EQE58565.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_000G1_scaffold_180_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5935..6048)
DNA (114bp) protein (38aa)
Uncharacterized protein n=177 Tax=Clostridium difficile RepID=T2T9W3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG73151.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_000G1_scaffold_180_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6535..7764
DNA (1230bp) protein (410aa)
Aminopeptidase {ECO:0000313|EMBL:CEK00313.1}; EC=3.4.11.- {ECO:0000313|EMBL:CEK00313.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Aminopeptidase n=157 Tax=Clostridium difficile RepID=C9XSK0_CLODC
aminopeptidase
L3_063_000G1_scaffold_180_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7969..10350)
DNA (2382bp) protein (794aa)
Putative homocysteine S-methyltransferase {ECO:0000313|EMBL:CAJ70503.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CAJ70503.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
putative homocysteine S-methyltransferase (EC:2.1.1.13)
Pterin binding enzyme family protein n=85 Tax=Clostridium difficile RepID=T3G2N8_CLODC
L3_063_000G1_scaffold_180_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10322..11047)
DNA (726bp) protein (242aa)
Vitamin B12 dependent methionine synthase, activation domain protein n=15 Tax=Clostridium difficile RepID=T2T6V6_CLODI
Vitamin B12 dependent methionine synthase, activation domain protein {ECO:0000313|EMBL:EHJ28876.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative S-adenosyl-L-methionine dependentmethionine synthase
L3_063_000G1_scaffold_180_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11037..11492)
DNA (456bp) protein (152aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
S-ribosylhomocysteine lyase n=2 Tax=Clostridium difficile RepID=T4P526_CLODI
luxS; S-ribosylhomocysteinase
L3_063_000G1_scaffold_180_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11774..12928)
DNA (1155bp) protein (385aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Two-component sensor histidine kinase (EC:2.7.13.3)
Two-component sensor histidine kinase n=86 Tax=Clostridium difficile RepID=U3WG56_CLODI
L3_063_000G1_scaffold_180_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12945..13637)
DNA (693bp) protein (231aa)
Transcriptional regulatory family protein n=168 Tax=Clostridium difficile RepID=C9XSK5_CLODC
two-component response regulator
Two-component response regulator, CheY family {ECO:0000313|EMBL:CAJ70507.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_063_000G1_scaffold_180_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13771..14487)
DNA (717bp) protein (239aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=170 Tax=Clostridium difficile RepID=C9XSK6_CLODC
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EQG73110.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_063_000G1_scaffold_180_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14612..15346
DNA (735bp) protein (245aa)
PP-loop family protein n=166 Tax=Clostridium difficile RepID=T3G3Q9_CLODC
ATPase
PP-loop family protein {ECO:0000313|EMBL:EQE58588.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_000G1_scaffold_180_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15631..16482)
DNA (852bp) protein (284aa)
Exported phosphoesterase {ECO:0000313|EMBL:CKG68164.1}; EC=3.1.-.- {ECO:0000313|EMBL:CKG68164.1};; Putative phosphoesterase {ECO:0000313|EMBL:CEK00321.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Putative phosphoesterase n=9 Tax=Clostridium difficile RepID=Q181K5_CLOD6
putative phosphoesterase
L3_063_000G1_scaffold_180_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16508..17446)
DNA (939bp) protein (313aa)
NAD dependent epimerase/dehydratase family protein n=205 Tax=Clostridium difficile RepID=C9XSK9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31843.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_000G1_scaffold_180_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17549..18199)
DNA (651bp) protein (217aa)
putative phosphatase (EC:3.1.3.-)
Putative phosphatase {ECO:0000313|EMBL:CCL24079.1}; EC=3.1.3.- {ECO:0000313|EMBL:CCL24079.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
HAD hydrolase, IA, variant 1 family protein n=2 Tax=Clostridium difficile RepID=T4PAH5_CLODI
L3_063_000G1_scaffold_180_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18348..18536)
DNA (189bp) protein (63aa)
Ferredoxin n=213 Tax=Clostridium difficile RepID=C9XSL1_CLODC
ferredoxin
Ferredoxin {ECO:0000313|EMBL:CCL00083.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_063_000G1_scaffold_180_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18643..19827)
DNA (1185bp) protein (395aa)
Amidohydrolase family protein n=72 Tax=Clostridium difficile RepID=C9XSL2_CLODC
amidohydrolase
Putative hydrolase {ECO:0000313|EMBL:CAJ70514.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_063_000G1_scaffold_180_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19969..20886)
DNA (918bp) protein (306aa)
Uncharacterized protein n=151 Tax=Clostridium difficile RepID=C9XSL3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE58598.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_000G1_scaffold_180_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20908..21636)
DNA (729bp) protein (243aa)
ABC transporter family protein n=211 Tax=Clostridium difficile RepID=C9XSL4_CLODC
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ28888.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_063_000G1_scaffold_180_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21832..22032)
DNA (201bp) protein (67aa)
Uncharacterized protein n=220 Tax=Clostridium difficile RepID=C9XSL5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL00087.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_063_000G1_scaffold_180_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22157..22537)
DNA (381bp) protein (127aa)
Glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein n=164 Tax=Clostridium difficile RepID=C9XSL6_CLODC
glyoxalase
Glyoxalase {ECO:0000313|EMBL:CKG67927.1}; Putative glyoxalase {ECO:0000313|EMBL:CEK00329.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS90089.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_063_000G1_scaffold_180_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22810..24168)
DNA (1359bp) protein (453aa)
MATE efflux family protein n=118 Tax=Clostridium difficile RepID=T3G132_CLODC
MATE efflux family protein {ECO:0000313|EMBL:EQE58636.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
multidrug resistance protein
L3_063_000G1_scaffold_180_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24616..25068
DNA (453bp) protein (151aa)
Staygreen family protein n=157 Tax=Clostridium difficile RepID=T3FZ65_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31852.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_063_000G1_scaffold_180_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25225..25842)
DNA (618bp) protein (206aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=G6BSQ0_CLODI
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CKG67811.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS90294.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_063_000G1_scaffold_180_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26265..27077)
DNA (813bp) protein (271aa)
MerR regulatory family protein n=172 Tax=Clostridium difficile RepID=T3G250_CLODC
Transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CAJ70522.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_063_000G1_scaffold_180_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27153..28571)
DNA (1419bp) protein (473aa)
Sodium/hydrogen exchanger family protein n=185 Tax=Clostridium difficile RepID=T3G349_CLODC
potassium/proton antiporter
Sodium/hydrogen exchanger family protein {ECO:0000313|EMBL:EQE58661.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_063_000G1_scaffold_180_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29055..29963)
DNA (909bp) protein (303aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=T2WZI8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL24091.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_063_000G1_scaffold_180_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30234..30611
DNA (378bp) protein (126aa)
3-demethylubiquinone-9 3-methyltransferase family protein n=27 Tax=Clostridium difficile RepID=T2XCH6_CLODI
3-demethylubiquinone-9 3-methyltransferase family protein {ECO:0000313|EMBL:EQE58646.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
Displaying items 1-30 of 118 in total

View Taxonomy