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L3_063_000G1_scaffold_181

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Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_181_1
Lactobacillus mali, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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419..2947
DNA (2529bp) protein (843aa)
Bacterial membrane protein yfho n=1 Tax=Lactobacillus mali KCTC 3596 = DSM 20444 RepID=J0L5F9_9LACO
Bacterial membrane protein yfho {ECO:0000313|EMBL:EJE99321.1}; TaxID=1046596 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus mali KCTC 3596 = DSM 20444.;"
bacterial membrane protein yfho
L3_063_000G1_scaffold_181_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2886..4733
DNA (1848bp) protein (616aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z5A5_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB90764.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_063_000G1_scaffold_181_3
unknown

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comp(4667..6331)
DNA (1665bp) protein (555aa)
Putative uncharacterized protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1P959_BACCO id=17459 bin=ACD1 species=Bacillus coagulans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
L3_063_000G1_scaffold_181_4
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6979..7233
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R9K7_CLOSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL04057.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_063_000G1_scaffold_181_5
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7199..7654
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R9K7_CLOSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL04057.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_063_000G1_scaffold_181_6
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7697..8536
DNA (840bp) protein (280aa)
Uncharacterized protein n=2 Tax=Myroides RepID=K1HFJ3_9FLAO
Lipoxygenase LH2
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ43744.1}; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
L3_063_000G1_scaffold_181_7
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8623..9795)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036F26B5
Uncharacterized protein {ECO:0000313|EMBL:EGN31342.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Major Facilitator Superfamily.
L3_063_000G1_scaffold_181_8
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(9811..10698)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R590_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43085.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
LysR family transcriptional regulator
L3_063_000G1_scaffold_181_9
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10915..14682
DNA (3768bp) protein (1256aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=2 Tax=Lachnospiraceae RepID=C9LBF2_BLAHA
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:EGG84620.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L3_063_000G1_scaffold_181_10
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14732..15625)
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FW55_9FIRM
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEA86252.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
yybE2; HTH-type transcriptional regulator YybE
L3_063_000G1_scaffold_181_11
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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15756..17114
DNA (1359bp) protein (453aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JN26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN37227.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
MATE efflux family protein
L3_063_000G1_scaffold_181_12
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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17295..19895
DNA (2601bp) protein (867aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6N7K9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC07070.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
L3_063_000G1_scaffold_181_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19938..20840)
DNA (903bp) protein (301aa)
LysR substrate binding domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4T3_RUMGN
LysR substrate binding domain protein {ECO:0000313|EMBL:EDN76956.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LysR family transcriptional regulator
L3_063_000G1_scaffold_181_14
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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21015..21884
DNA (870bp) protein (290aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Shikimate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5A998_9FIRM
ydiB; shikimate 5-dehydrogenase
L3_063_000G1_scaffold_181_15
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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21898..23091
DNA (1194bp) protein (398aa)
MFS family major facilitator transporter n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AKD7_9FIRM
MFS family major facilitator transporter {ECO:0000313|EMBL:CCX39801.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
transport protein
L3_063_000G1_scaffold_181_16
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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23105..23908
DNA (804bp) protein (268aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AFQ8_9FIRM
L3_063_000G1_scaffold_181_17
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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23910..24755
DNA (846bp) protein (282aa)
Xylose isomerase-like TIM barrel n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AAS9_9FIRM
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:CCX39803.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Xylose isomerase domain-containing protein TIM barrel
L3_063_000G1_scaffold_181_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24778..26697
DNA (1920bp) protein (640aa)
Pyridine nucleotide-disulfide oxidoreductase n=3 Tax=Lachnospiraceae RepID=A7B4T1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19174.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
oxidoreductase
L3_063_000G1_scaffold_181_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26712..27581
DNA (870bp) protein (290aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
aroE2; shikimate dehydrogenase AroE (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4T0_RUMGN
L3_063_000G1_scaffold_181_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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27559..27726
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B4S9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47873.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_063_000G1_scaffold_181_21
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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27827..28060
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RQH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC47574.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L3_063_000G1_scaffold_181_22
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28145..28483
DNA (339bp) protein (113aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D4CGE1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY81316.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
hypothetical protein
L3_063_000G1_scaffold_181_23
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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28480..29433
DNA (954bp) protein (318aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
tRNA-dihydrouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LBE8_BLAHA
dihydrouridine synthase
L3_063_000G1_scaffold_181_24
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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29471..30238
DNA (768bp) protein (256aa)
Putative AP endonuclease family 2 n=1 Tax=Dorea sp. CAG:105 RepID=R5D631_9FIRM
Putative AP endonuclease family 2 {ECO:0000313|EMBL:CCX75613.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
xylose isomerase domain-containing protein TIM barrel
L3_063_000G1_scaffold_181_25
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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30346..31818
DNA (1473bp) protein (491aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6W0_BLAHA
L3_063_000G1_scaffold_181_26
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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31815..34046
DNA (2232bp) protein (744aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Primosomal protein N n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6W1_BLAHA
L3_063_000G1_scaffold_181_27
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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34068..34547
DNA (480bp) protein (160aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RWL1_9FIRM
L3_063_000G1_scaffold_181_28
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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34544..35476
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6SLG0_9FIRM
L3_063_000G1_scaffold_181_29
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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35480..36844
DNA (1365bp) protein (455aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6W4_BLAHA
L3_063_000G1_scaffold_181_30
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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36832..37878
DNA (1047bp) protein (349aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3ABH3_9FIRM
Displaying items 1-30 of 107 in total

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