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L3_063_000G1_scaffold_190

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_190_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(61..753)
DNA (693bp) protein (231aa)
NifU homolog involved in Fe-S cluster formation n=4 Tax=Roseburia RepID=D4KX46_9FIRM
NifU homolog involved in Fe-S cluster formation
NifU homolog involved in Fe-S cluster formation {ECO:0000313|EMBL:CBL11936.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_190_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(901..2493)
DNA (1593bp) protein (531aa)
Putative serine/Threonine protein kinase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BP64_9FIRM
Putative serine/Threonine protein kinase {ECO:0000313|EMBL:CDA55037.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_190_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2515..4011)
DNA (1497bp) protein (499aa)
Methyl-accepting chemotaxis protein n=2 Tax=Roseburia RepID=D4KX44_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA55038.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_190_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4097..4768)
DNA (672bp) protein (224aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6AVL7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11933.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_190_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4945..8898)
DNA (3954bp) protein (1318aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DNA topoisomerase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFF6_9FIRM
DNA topoisomerase
L3_063_000G1_scaffold_190_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8922..10286)
DNA (1365bp) protein (455aa)
Predicted ATPase (AAA+ superfamily) n=3 Tax=Roseburia RepID=D4KRB8_9FIRM
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CDA55043.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_190_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10407..11501)
DNA (1095bp) protein (365aa)
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase (Non-peptidoglycan organisms) {ECO:0000313|EMBL:CBL09421.1}; EC=1.2.1.11 {ECO:0000313|EMBL:CBL09421.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Aspartate-semialdehyde dehydrogenase (Non-peptidoglycan organisms) n=3 Tax=Roseburia RepID=D4KRB9_9FIRM
L3_063_000G1_scaffold_190_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11683..13068)
DNA (1386bp) protein (462aa)
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Argininosuccinate lyase n=4 Tax=Roseburia RepID=D4KRC0_9FIRM
L3_063_000G1_scaffold_190_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13162..13812)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99440.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_063_000G1_scaffold_190_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13809..14981)
DNA (1173bp) protein (391aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRC1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09423.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_190_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14985..15479)
DNA (495bp) protein (165aa)
HD domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B279_9FIRM
HD domain {ECO:0000313|EMBL:CDA55049.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
HD domain.
L3_063_000G1_scaffold_190_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15557..15943)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX36_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11926.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_190_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16075..16551)
DNA (477bp) protein (159aa)
Predicted flavin-nucleotide-binding protein n=3 Tax=Roseburia intestinalis RepID=D4KRC4_9FIRM
Predicted flavin-nucleotide-binding protein
Predicted flavin-nucleotide-binding protein {ECO:0000313|EMBL:CBL09426.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_190_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16621..17595)
DNA (975bp) protein (325aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=3 Tax=Roseburia intestinalis RepID=D4KRC5_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_190_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17600..18241)
DNA (642bp) protein (214aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73)
Phosphoglycerate mutase family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AST4_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:CDA55053.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_190_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18214..18594)
DNA (381bp) protein (127aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.7.62 2.7.1.156)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:CBL11922.1}; EC=2.7.1.156 {ECO:0000313|EMBL:CBL11922.1};; EC=2.7.7.62 {ECO:0000313|EMBL:CBL11922.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase n=4 Tax=Roseburia RepID=D4KRC7_9FIRM
L3_063_000G1_scaffold_190_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18625..19392)
DNA (768bp) protein (256aa)
Cobalamin-5-phosphate synthase (EC:2.7.8.26)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Cobalamin synthase n=3 Tax=Roseburia RepID=D4KRC8_9FIRM
L3_063_000G1_scaffold_190_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19389..20030)
DNA (642bp) protein (214aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.7.62 2.7.1.156)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase {ECO:0000313|EMBL:CBL11920.1}; EC=2.7.1.156 {ECO:0000313|EMBL:CBL11920.1};; EC=2.7.7.62 {ECO:0000313|EMBL:CBL11920.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX30_9FIRM
L3_063_000G1_scaffold_190_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20027..21193)
DNA (1167bp) protein (389aa)
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344, ECO:0000313|EMBL:CBL11919.1}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328, ECO:0000313|EMBL:CBL11919.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=3 Tax=Roseburia intestinalis RepID=D4KX29_9FIRM
L3_063_000G1_scaffold_190_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21341..22915)
DNA (1575bp) protein (525aa)
adenosylcobyric acid synthase (glutamine-hydrolysing) (EC:6.3.5.10)
Cobyric acid synthase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B285_9FIRM
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_190_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22941..24665)
DNA (1725bp) protein (575aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRD3_9FIRM
ABC-type sugar transport system, periplasmic component
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CBL09435.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_190_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24748..26538)
DNA (1791bp) protein (597aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain. (EC:2.7.13.3)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain {ECO:0000313|EMBL:CBL11916.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CBL11916.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain n=2 Tax=Roseburia intestinalis RepID=D4KRD4_9FIRM
L3_063_000G1_scaffold_190_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26580..28064)
DNA (1485bp) protein (495aa)
Alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase {ECO:0000313|EMBL:CBL09437.1}; EC=3.2.1.51 {ECO:0000313|EMBL:CBL09437.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Alpha-L-fucosidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRD5_9FIRM
L3_063_000G1_scaffold_190_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28193..30223)
DNA (2031bp) protein (677aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084, ECO:0000313|EMBL:CBL09438.1}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084, ECO:0000313|EMBL:CBL09438.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRD6_9FIRM
L3_063_000G1_scaffold_190_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30307..30930)
DNA (624bp) protein (208aa)
Predicted integral membrane protein n=3 Tax=Roseburia RepID=D4KRD7_9FIRM
Predicted integral membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55064.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_190_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31119..32921)
DNA (1803bp) protein (601aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRD9_9FIRM
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL09441.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_063_000G1_scaffold_190_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32981..33946)
DNA (966bp) protein (322aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=3 Tax=Roseburia RepID=D4KRE0_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL09442.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_190_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33960..35429)
DNA (1470bp) protein (490aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=4 Tax=Roseburia RepID=D4KRE1_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL11909.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_190_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35666..37369)
DNA (1704bp) protein (568aa)
Putative 2Fe-2S iron-sulfur cluster binding domain protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B291_9FIRM
Putative 2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:CDA55069.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Uncharacterized metal-binding protein
L3_063_000G1_scaffold_190_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37335..37430)
DNA (96bp) protein (32aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KX17_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09445.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 111 in total

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