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L3_063_000G1_scaffold_231

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_231_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

189..2138
DNA (1950bp) protein (650aa)
ABC transporter, ATP-binding protein n=4 Tax=Lachnospiraceae RepID=A5KKD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79650.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_063_000G1_scaffold_231_2
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2279..3142)
DNA (864bp) protein (288aa)
EDD domain protein, DegV family n=5 Tax=Clostridiales RepID=A5KKD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79651.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
EDD domain protein, DegV family
L3_063_000G1_scaffold_231_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3311..4807)
DNA (1497bp) protein (499aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QDK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26648.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Bacillus/Clostridium GerA spore germination protein.
L3_063_000G1_scaffold_231_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4809..5483)
DNA (675bp) protein (225aa)
Putative penicillin-binding protein 1F n=4 Tax=Lachnospiraceae RepID=A5KKD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79653.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_063_000G1_scaffold_231_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5667..6203)
DNA (537bp) protein (179aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
DUTP diphosphatase n=4 Tax=Lachnospiraceae RepID=A5KKC9_9FIRM
DUTPase {ECO:0000313|EMBL:EFV20505.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_063_000G1_scaffold_231_6
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6200..7399)
DNA (1200bp) protein (400aa)
Classes I and II family Aminotransferase n=4 Tax=Lachnospiraceae RepID=E5XDZ9_9FIRM
Classes I and II family Aminotransferase {ECO:0000313|EMBL:EFV20504.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Aspartate/tyrosine/aromatic aminotransferase
L3_063_000G1_scaffold_231_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8236..9489
DNA (1254bp) protein (418aa)
Transposase, IS4 family n=8 Tax=root RepID=A5KKC4_9FIRM
Transposase IS4 family {ECO:0000313|EMBL:CCZ25349.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_063_000G1_scaffold_231_8
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9917..10837)
DNA (921bp) protein (307aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=5 Tax=Clostridiales RepID=A5KKC3_9FIRM
L3_063_000G1_scaffold_231_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10842..12215)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25347.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted permease
L3_063_000G1_scaffold_231_10
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12539..12859)
DNA (321bp) protein (107aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20500.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Domain of Unknown Function (DUF1540).
L3_063_000G1_scaffold_231_11
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12910..13638)
DNA (729bp) protein (243aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KKB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79440.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_063_000G1_scaffold_231_12
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13639..14154)
DNA (516bp) protein (172aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27362.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted metal-binding protein related to the C-terminal domain of SecA
L3_063_000G1_scaffold_231_13
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14341..14556
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KKB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20497.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_063_000G1_scaffold_231_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14561..14719)
DNA (159bp) protein (53aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27360.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_063_000G1_scaffold_231_15
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14928..16208)
DNA (1281bp) protein (427aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=4 Tax=Lachnospiraceae RepID=A5KKB5_9FIRM
L3_063_000G1_scaffold_231_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16485..16727
DNA (243bp) protein (81aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QFH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27358.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_063_000G1_scaffold_231_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16838..18253)
DNA (1416bp) protein (472aa)
Transcriptional regulator, GntR family n=4 Tax=Lachnospiraceae RepID=A5KKB3_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EDK25766.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
L3_063_000G1_scaffold_231_18
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18277..19944)
DNA (1668bp) protein (556aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=3 Tax=unclassified Lachnospiraceae RepID=E5XDY7_9FIRM
L3_063_000G1_scaffold_231_19
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20162..21628
DNA (1467bp) protein (489aa)
Transporter n=4 Tax=Lachnospiraceae RepID=A5KKB1_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_063_000G1_scaffold_231_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21734..22090)
DNA (357bp) protein (119aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27354.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_063_000G1_scaffold_231_21
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22574..23020)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=5 Tax=Clostridiales RepID=A5KKA9_9FIRM
L3_063_000G1_scaffold_231_22
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23053..23679)
DNA (627bp) protein (209aa)
RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=A5KKA8_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
RNA polymerase, sigma 30 subunit, SigH
L3_063_000G1_scaffold_231_23
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23714..24490)
DNA (777bp) protein (259aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=5 Tax=Clostridiales RepID=A5KKA7_9FIRM
RNA methyltransferase {ECO:0000313|EMBL:EFV20487.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_063_000G1_scaffold_231_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24471..24938)
DNA (468bp) protein (156aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Mini-ribonuclease 3 n=5 Tax=Clostridiales RepID=A5KKA6_9FIRM
hypothetical protein
L3_063_000G1_scaffold_231_25
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24923..26329)
DNA (1407bp) protein (469aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=4 Tax=Clostridiales RepID=A5KKA5_9FIRM
L3_063_000G1_scaffold_231_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26316..27002)
DNA (687bp) protein (229aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=5 Tax=Clostridiales RepID=E5XDX9_9FIRM
L3_063_000G1_scaffold_231_27
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27395..28591)
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XDX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79456.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_063_000G1_scaffold_231_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28592..29143)
DNA (552bp) protein (184aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=5 Tax=Clostridiales RepID=A5KKA0_9FIRM
L3_063_000G1_scaffold_231_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29146..29772)
DNA (627bp) protein (209aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KK99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27345.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_063_000G1_scaffold_231_30
unknown

Not on your lists

comp(30547..30660)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying items 1-30 of 105 in total

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