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L3_063_000G1_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_238_1
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..139
DNA (138bp) protein (46aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EDS18940.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EDS18940.1};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=4 Tax=Erysipelotrichaceae RepID=B0N3B8_9FIRM
L3_063_000G1_scaffold_238_2
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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141..788
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AIF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ47751.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
hypothetical protein
L3_063_000G1_scaffold_238_3
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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968..2557
DNA (1590bp) protein (530aa)
PTS system maltose-specific EIICB component {ECO:0000313|EMBL:EDS18942.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EDS18942.1};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
PTS system maltose-specific EIICB component n=4 Tax=Erysipelotrichaceae RepID=B0N3C0_9FIRM
ptiB; PTS system arbutin-like transporter subunit IIBC
L3_063_000G1_scaffold_238_4
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2574..3902
DNA (1329bp) protein (443aa)
Maltose-6'-phosphate glucosidase n=5 Tax=Erysipelotrichaceae RepID=B0N3C1_9FIRM
Maltose-6'-phosphate glucosidase {ECO:0000313|EMBL:CCZ36598.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase
L3_063_000G1_scaffold_238_5
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3918..4409
DNA (492bp) protein (164aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N3C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ36597.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_063_000G1_scaffold_238_6
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4422..4910
DNA (489bp) protein (163aa)
PTS system, glucose subfamily, IIA component n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AIF4_9FIRM
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EHQ47755.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
PTS system glucose subfamily transporter subunit IIA
L3_063_000G1_scaffold_238_7
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5023..6357
DNA (1335bp) protein (445aa)
MATE efflux family protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N3C4_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EDS18946.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
putative efflux protein, MATE family
L3_063_000G1_scaffold_238_8
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6480..6740
DNA (261bp) protein (87aa)
10 kDa chaperonin n=5 Tax=Erysipelotrichaceae RepID=B0N3C5_9FIRM
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
groES; molecular chaperone GroES
L3_063_000G1_scaffold_238_9
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6754..8370
DNA (1617bp) protein (539aa)
60 kDa chaperonin n=6 Tax=Erysipelotrichaceae RepID=B0N3C6_9FIRM
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
chaperonin GroL
L3_063_000G1_scaffold_238_10
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8413..10317)
DNA (1905bp) protein (635aa)
NAD+ synthetase n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AIF8_9FIRM
NAD+ synthetase {ECO:0000313|EMBL:EHQ47759.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
NAD synthetase
L3_063_000G1_scaffold_238_11
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10399..10557)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:183 RepID=R5RP72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ36591.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_063_000G1_scaffold_238_12
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10596..11759)
DNA (1164bp) protein (388aa)
Transporter, major facilitator family protein n=5 Tax=Erysipelotrichaceae RepID=B0N3C9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ36590.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
anion symport for sucrose
L3_063_000G1_scaffold_238_13
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11922..12716
DNA (795bp) protein (265aa)
Formate/nitrite transporter n=5 Tax=Erysipelotrichaceae RepID=B0N3D0_9FIRM
Formate/nitrite transporter {ECO:0000313|EMBL:EDS18952.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
ywcJ; transporter YwcJ
L3_063_000G1_scaffold_238_14
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13373..13945
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N3D2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS18953.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
hypothetical protein
L3_063_000G1_scaffold_238_15
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13938..14987
DNA (1050bp) protein (350aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=G9R0D1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ36586.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
hypothetical protein
L3_063_000G1_scaffold_238_16
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15129..15875
DNA (747bp) protein (249aa)
Ser/Thr phosphatase family protein n=5 Tax=Erysipelotrichaceae RepID=B0N3D4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ47764.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
serine/threonine protein phosphatase
L3_063_000G1_scaffold_238_17
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15932..16684
DNA (753bp) protein (251aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N3D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ36584.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_063_000G1_scaffold_238_18
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16822..17649)
DNA (828bp) protein (276aa)
YdjC-like protein n=5 Tax=Erysipelotrichaceae RepID=B0N3D6_9FIRM
YdjC-like protein {ECO:0000313|EMBL:EDS18958.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
polysaccharide deacetylase
L3_063_000G1_scaffold_238_19
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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17686..18555
DNA (870bp) protein (290aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
Shikimate dehydrogenase n=5 Tax=Erysipelotrichaceae RepID=B0N3D7_9FIRM
shikimate 5-dehydrogenase
L3_063_000G1_scaffold_238_20
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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18555..19142
DNA (588bp) protein (196aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=4 Tax=Coprobacillus RepID=C3RNG8_9FIRM
L3_063_000G1_scaffold_238_21
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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19143..19652
DNA (510bp) protein (170aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=5 Tax=Erysipelotrichaceae RepID=B0N3D9_9FIRM
L3_063_000G1_scaffold_238_22
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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19642..20292
DNA (651bp) protein (217aa)
TIGR01906 family protein n=5 Tax=Erysipelotrichaceae RepID=B0N3E0_9FIRM
Integral membrane protein {ECO:0000313|EMBL:EHQ47770.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
integral membrane protein TIGR01906
L3_063_000G1_scaffold_238_23
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20282..20986)
DNA (705bp) protein (235aa)
Restriction endonuclease n=3 Tax=Erysipelotrichaceae RepID=B0N3E1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM92187.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes
L3_063_000G1_scaffold_238_24
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21283..21867)
DNA (585bp) protein (195aa)
Rubrerythrin n=5 Tax=Erysipelotrichaceae RepID=B0N3E2_9FIRM
Rubrerythrin {ECO:0000313|EMBL:EDS18964.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
rubrerythrin
L3_063_000G1_scaffold_238_25
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(21892..22281)
DNA (390bp) protein (130aa)
Transcriptional regulator, Fur family n=5 Tax=Erysipelotrichaceae RepID=B0N3E3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ31704.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
ferric uptake regulator
L3_063_000G1_scaffold_238_26
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22399..23256)
DNA (858bp) protein (286aa)
Cof-like hydrolase n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R0E2_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EHM92190.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
cof family hydrolase
L3_063_000G1_scaffold_238_27
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23377..24291)
DNA (915bp) protein (305aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=C3RNH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ31701.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
hypothetical protein
L3_063_000G1_scaffold_238_28
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24346..25575
DNA (1230bp) protein (410aa)
GTPase HflX n=2 Tax=Erysipelotrichaceae RepID=B0N3E6_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
hflX; GTP-binding protein HflX
L3_063_000G1_scaffold_238_29
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25589..25780
DNA (192bp) protein (64aa)
Uncharacterized protein n=5 Tax=Erysipelotrichaceae RepID=B0N3E7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ31699.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L3_063_000G1_scaffold_238_30
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25840..26826
DNA (987bp) protein (329aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=4 Tax=Erysipelotrichaceae RepID=B0N3E8_9FIRM
Displaying items 1-30 of 104 in total

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