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L3_063_000G1_scaffold_322

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_322_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..512
DNA (510bp) protein (170aa)
Putative 2,5-diketo-D-gluconic acid reductase B n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9R0_BIFBI
Putative 2,5-diketo-D-gluconic acid reductase B {ECO:0000313|EMBL:EFR50352.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_063_000G1_scaffold_322_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

497..1123
DNA (627bp) protein (209aa)
Adenylate cyclase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ2_BIFBI
adenylate cyclase
Adenylate cyclase {ECO:0000313|EMBL:AFL03805.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_063_000G1_scaffold_322_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1222..2208)
DNA (987bp) protein (329aa)
Thioredoxin n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ1_BIFBI
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AFL03804.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_063_000G1_scaffold_322_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2445..3458)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3WFY9_BIFBI
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CDB23254.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_063_000G1_scaffold_322_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3451..4524)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H860_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50146.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_063_000G1_scaffold_322_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4615..5604
DNA (990bp) protein (330aa)
fkbP; peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYX8_BIFBP
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_063_000G1_scaffold_322_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(5860..6552)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=8 Tax=Bifidobacterium RepID=E3ELQ4_BIFBS
rlpA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_063_000G1_scaffold_322_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(6567..6998)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=8 Tax=Bifidobacterium RepID=E3ELQ3_BIFBS
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_063_000G1_scaffold_322_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7323..8246)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNJ2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23259.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_063_000G1_scaffold_322_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8446..9156
DNA (711bp) protein (237aa)
Transcriptional regulator, TetR family n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYX4_BIFBP
tetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADO52446.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_063_000G1_scaffold_322_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9378..10721
DNA (1344bp) protein (448aa)
Macrolide-efflux protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYX3_BIFBP
macrolide-efflux protein
ABC transporter permease {ECO:0000313|EMBL:EKF15190.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_063_000G1_scaffold_322_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10818..12143)
DNA (1326bp) protein (442aa)
murA; UDP-N-acetylglucosamine1-carboxyvinyl transferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=8 Tax=Bifidobacterium RepID=E3ELP9_BIFBS
L3_063_000G1_scaffold_322_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12422..13675)
DNA (1254bp) protein (418aa)
Dihydroorotate dehydrogenase n=4 Tax=Bifidobacterium RepID=E3ELP8_BIFBS
dihydroorotate dehydrogenase
Dihydroorotate dehydrogenase {ECO:0000313|EMBL:ADO52443.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_063_000G1_scaffold_322_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13700..14806)
DNA (1107bp) protein (369aa)
CAAX amino terminal protease family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CIL4_BIFBI
CAAX amino terminal protease
Uncharacterized protein {ECO:0000313|EMBL:KFI42327.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_063_000G1_scaffold_322_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14935..15108)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7J1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49583.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_063_000G1_scaffold_322_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15703..16083)
DNA (381bp) protein (127aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V7I9_BIFBI
hypothetical protein
Putative cell surface protein {ECO:0000313|EMBL:BAQ97427.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_063_000G1_scaffold_322_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16158..20177)
DNA (4020bp) protein (1340aa)
SNF2 family N-terminal domain protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7I8_BIFBI
SNF2 family N-terminal domain protein {ECO:0000313|EMBL:EFR49580.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
helicase
L3_063_000G1_scaffold_322_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20336..21028)
DNA (693bp) protein (231aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
LeuD 3-isopropylmalate dehydratase small subunit n=6 Tax=Bifidobacterium RepID=E4NYW7_BIFBP
L3_063_000G1_scaffold_322_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21178..22581)
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
3-isopropylmalate dehydratase large subunit n=7 Tax=Bifidobacterium bifidum RepID=E3ELP3_BIFBS
leuC; 3-isopropylmalate dehydratase large subunit
L3_063_000G1_scaffold_322_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22889..23710
DNA (822bp) protein (274aa)
HTH-type transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WFX4_BIFBI
HTH-type transcriptional regulator {ECO:0000313|EMBL:CDB23819.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
kipR; HTH-type transcriptional regulator
L3_063_000G1_scaffold_322_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23853..25142)
DNA (1290bp) protein (430aa)
Putative phosphohydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFX3_BIFBI
putative phosphohydrolase
Phosphoesterase {ECO:0000313|EMBL:CDB23821.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_063_000G1_scaffold_322_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26214..26666
DNA (453bp) protein (151aa)
ATPase (AAA+ superfamily)-like protein n=3 Tax=Bifidobacterium bifidum RepID=E4NYW2_BIFBP
ATPase AAA
Uncharacterized protein {ECO:0000313|EMBL:ERI83888.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_063_000G1_scaffold_322_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26908..28446)
DNA (1539bp) protein (513aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate--tRNA ligase n=5 Tax=Bifidobacterium bifidum RepID=E3ELN8_BIFBS
L3_063_000G1_scaffold_322_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28695..28790)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I622_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50219.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_063_000G1_scaffold_322_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29891..30550)
DNA (660bp) protein (220aa)
phosphoglycolate phosphatase (EC:3.1.3.18)
Haloacid dehalogenase-like hydrolase n=5 Tax=Bifidobacterium bifidum RepID=E3ELN6_BIFBS
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:ADO52431.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_063_000G1_scaffold_322_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30981..32048
DNA (1068bp) protein (356aa)
ABC-type nitrate/sulfonate/bicarbonate transport system n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GQ48_9BIFI
ABC-type nitrate/sulfonate/bicarbonate transport system {ECO:0000313|EMBL:CDB23829.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative solute binding protein of ABC transporter
L3_063_000G1_scaffold_322_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32309..33094
DNA (786bp) protein (262aa)
Nitrate/sulfonate/taurine transport system, permease protein n=6 Tax=Bifidobacterium RepID=E3ELN4_BIFBS
ABC transporter permease
Solute binding protein of ABC transporter system {ECO:0000313|EMBL:KFI42315.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_063_000G1_scaffold_322_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33371..34297)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HS69_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50223.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_063_000G1_scaffold_322_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34538..35197)
DNA (660bp) protein (220aa)
Phosphoglycerate mutase n=4 Tax=Bifidobacterium bifidum RepID=E3ELN2_BIFBS
gpm1; phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:EKF14883.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_063_000G1_scaffold_322_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35607..37037
DNA (1431bp) protein (477aa)
Major facilitator superfamily MFS_1 n=4 Tax=Bifidobacterium bifidum RepID=E4NYV5_BIFBP
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:EKE50225.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Displaying items 1-30 of 68 in total

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