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L3_063_000G1_scaffold_397

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_397_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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224..610
DNA (387bp) protein (129aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GAT5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10907.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_397_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

622..2016
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01102.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_063_000G1_scaffold_397_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2186..2803
DNA (618bp) protein (206aa)
Lysophospholipase L1 and related esterases (EC:3.1.1.2)
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CBL10774.1}; EC=3.1.1.2 {ECO:0000313|EMBL:CBL10774.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Lysophospholipase L1 and related esterases n=2 Tax=Roseburia RepID=D4KK94_9FIRM
L3_063_000G1_scaffold_397_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2895..3239
DNA (345bp) protein (115aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GAT2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57295.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_397_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3636..4205
DNA (570bp) protein (190aa)
Glycerol-3-phosphate responsive antiterminator (MRNA-binding) n=4 Tax=Roseburia RepID=D4KK96_9FIRM
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
Glycerol-3-phosphate responsive antiterminator (MRNA-binding) {ECO:0000313|EMBL:CDA57294.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_397_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4325..5821
DNA (1497bp) protein (499aa)
glycerol kinase (EC:2.7.1.30)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glycerol kinase n=2 Tax=Roseburia RepID=D4KU70_9FIRM
L3_063_000G1_scaffold_397_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5894..6604
DNA (711bp) protein (237aa)
MIP family channel proteins n=4 Tax=Roseburia RepID=D4KK98_9FIRM
MIP family channel proteins
MIP family channel proteins {ECO:0000313|EMBL:CBL10778.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6789..8288
DNA (1500bp) protein (500aa)
Predicted dehydrogenase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KK99_9FIRM
Predicted dehydrogenase
Predicted dehydrogenase {ECO:0000313|EMBL:CBL10779.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8306..9574
DNA (1269bp) protein (423aa)
Thioredoxin reductase (EC:1.5.3.1)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAP5_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEV01063.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_063_000G1_scaffold_397_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9652..10011
DNA (360bp) protein (120aa)
Uncharacterized protein with conserved CXXC pairs n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU74_9FIRM
Uncharacterized protein with conserved CXXC pairs
Uncharacterized protein with conserved CXXC pairs {ECO:0000313|EMBL:CBL10914.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_063_000G1_scaffold_397_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10123..11445)
DNA (1323bp) protein (441aa)
Putative fibronectin type III domain protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZE1_9FIRM
Putative fibronectin type III domain protein {ECO:0000313|EMBL:CDA57288.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Fibronectin type III domain.
L3_063_000G1_scaffold_397_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11804..11950
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BVM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57287.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_397_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12081..14078
DNA (1998bp) protein (666aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU78_9FIRM
L3_063_000G1_scaffold_397_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14155..15477
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B2B1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57285.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_397_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15615..16487
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B8L3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57284.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_397_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16577..17272
DNA (696bp) protein (232aa)
HAMP domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKA6_9FIRM
HAMP domain.
HAMP domain {ECO:0000313|EMBL:CBL10786.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17239..17574
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU80_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57283.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_063_000G1_scaffold_397_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17766..18560
DNA (795bp) protein (265aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family {ECO:0000313|EMBL:CBL10921.1}; EC=3.1.21.- {ECO:0000313|EMBL:CBL10921.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Hydrolase TatD family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BVM1_9FIRM
L3_063_000G1_scaffold_397_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18619..19476)
DNA (858bp) protein (286aa)
Putative DNA metabolism protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAN6_9FIRM
Putative DNA metabolism protein {ECO:0000313|EMBL:EEV01054.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_063_000G1_scaffold_397_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19605..20885)
DNA (1281bp) protein (427aa)
Predicted DNA-binding protein with the Helix-hairpin-helix motif n=2 Tax=Roseburia intestinalis RepID=D4KU83_9FIRM
Predicted DNA-binding protein with the Helix-hairpin-helix motif
Predicted DNA-binding protein with the Helix-hairpin-helix motif {ECO:0000313|EMBL:CBL10791.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21185..23278
DNA (2094bp) protein (698aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU84_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL10924.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Methyl-accepting chemotaxis protein
L3_063_000G1_scaffold_397_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23485..23904
DNA (420bp) protein (140aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GAN3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10793.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23915..24787
DNA (873bp) protein (291aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Roseburia intestinalis RepID=D4KKB4_9FIRM
L3_063_000G1_scaffold_397_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24809..25438
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B8K2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57274.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_063_000G1_scaffold_397_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25497..26519
DNA (1023bp) protein (341aa)
SpoIID/LytB domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB5_9FIRM
SpoIID/LytB domain
SpoIID/LytB domain {ECO:0000313|EMBL:CBL10795.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26604..27377
DNA (774bp) protein (258aa)
Membrane proteins related to metalloendopeptidases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB6_9FIRM
Membrane proteins related to metalloendopeptidases
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CBL10796.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27496..29109
DNA (1614bp) protein (538aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAM8_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEV01046.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
diguanylate cyclase (GGDEF) domain
L3_063_000G1_scaffold_397_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29481..31073
DNA (1593bp) protein (531aa)
Superfamily II DNA and RNA helicases n=2 Tax=Roseburia intestinalis RepID=D4KKB8_9FIRM
Superfamily II DNA and RNA helicases
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEV01044.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_063_000G1_scaffold_397_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31143..32492)
DNA (1350bp) protein (450aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB9_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL10799.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_063_000G1_scaffold_397_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32738..33430
DNA (693bp) protein (231aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Roseburia RepID=D4KU93_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulator receiver domain protein {ECO:0000313|EMBL:EEV01042.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying items 1-30 of 76 in total

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