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L3_063_000G1_scaffold_495

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_495_1
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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2..109
DNA (108bp) protein (36aa)
SIS domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZBM0_9ACTN
SIS domain protein {ECO:0000313|EMBL:CDA36290.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
Predicted phosphosugar isomerases
L3_063_000G1_scaffold_495_2
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

199..825
DNA (627bp) protein (209aa)
HAD hydrolase family IA variant 3 n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZI61_9ACTN
HAD hydrolase family IA variant 3 {ECO:0000313|EMBL:CDA36289.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_063_000G1_scaffold_495_3
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

957..1679
DNA (723bp) protein (241aa)
UbiC transcription regulator-associated domain protein n=2 Tax=Atopobium RepID=U2TPW4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EMZ42519.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;"
Transcriptional regulators
L3_063_000G1_scaffold_495_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1745..2752)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAJ7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44131.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_000G1_scaffold_495_5
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

3322..5397
DNA (2076bp) protein (692aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EEA89775.1}; EC=3.6.1.- {ECO:0000313|EMBL:EEA89775.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ATP-dependent DNA helicase RecQ n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD73_9ACTN
ATP-dependent DNA helicase RecQ
L3_063_000G1_scaffold_495_6
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5579..6652)
DNA (1074bp) protein (358aa)
malate dehydrogenase (NAD) (EC:1.1.1.37)
Putative L-lactate dehydrogenase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAI7_9ACTN
Putative L-lactate dehydrogenase {ECO:0000313|EMBL:EEP44121.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
L3_063_000G1_scaffold_495_7
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6894..7820
DNA (927bp) protein (309aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7H5_9ACTN
L3_063_000G1_scaffold_495_8
unknown

Not on your lists

7869..8399
DNA (531bp) protein (177aa)

This feature has no annotations

L3_063_000G1_scaffold_495_9
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8396..11275
DNA (2880bp) protein (960aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
UvrD/REP helicase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAI4_9ACTN
UvrD/REP helicase
L3_063_000G1_scaffold_495_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11703..15911
DNA (4209bp) protein (1403aa)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ89_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA81785.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_063_000G1_scaffold_495_11
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16170..17489
DNA (1320bp) protein (440aa)
Branched-chain amino acid transport system II carrier protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7G9_9ACTN
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:EEA91779.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
branched-chain amino acid transport system II carrier protein
L3_063_000G1_scaffold_495_12
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17696..18661
DNA (966bp) protein (322aa)
Glucokinase {ECO:0000313|EMBL:EEA91775.1}; EC=2.7.1.2 {ECO:0000313|EMBL:EEA91775.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
glucokinase (EC:2.7.1.2)
Glucokinase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7G5_9ACTN
L3_063_000G1_scaffold_495_13
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18761..19996)
DNA (1236bp) protein (412aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WHA0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX67119.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
Fucose permease
L3_063_000G1_scaffold_495_14
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20067..20915)
DNA (849bp) protein (283aa)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7H7_9ACTN
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EEA91747.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
HisJ family histidinol phosphate phosphatase
L3_063_000G1_scaffold_495_15
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21226..22167
DNA (942bp) protein (314aa)
inorganic diphosphatase (EC:3.6.1.1)
DHHA2 domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAH9_9ACTN
DHHA2 domain protein {ECO:0000313|EMBL:EEP44113.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
L3_063_000G1_scaffold_495_16
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22362..23717
DNA (1356bp) protein (452aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAH8_9ACTN
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
NhaA family sodium/proton antiporter
L3_063_000G1_scaffold_495_17
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24049..24303)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAH7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEP44111.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_000G1_scaffold_495_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(24314..25447)
DNA (1134bp) protein (378aa)
DNA mismatch endonuclease Vsr n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z9A7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74381.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA mismatch endonuclease Vsr
L3_063_000G1_scaffold_495_19
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25632..25790
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7I6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA91756.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L3_063_000G1_scaffold_495_20
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25845..26630
DNA (786bp) protein (262aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7I7_9ACTN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA91757.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ABC transporter
L3_063_000G1_scaffold_495_21
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26620..28806
DNA (2187bp) protein (729aa)
Efflux ABC transporter, permease protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7I8_9ACTN
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEA91758.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L3_063_000G1_scaffold_495_22
unknown

Not on your lists

comp(28873..29055)
DNA (183bp) protein (61aa)

This feature has no annotations

L3_063_000G1_scaffold_495_23
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29101..29877)
DNA (777bp) protein (259aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000313|EMBL:EEA91762.1}; EC=6.3.3.2 {ECO:0000313|EMBL:EEA91762.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G7J2_9ACTN
L3_063_000G1_scaffold_495_24
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(29951..33115)
DNA (3165bp) protein (1055aa)
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EEP44243.1}; EC=3.4.24.- {ECO:0000313|EMBL:EEP44243.1};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Peptidase M16 inactive domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAG6_9ACTN
peptidase M16C associated domain-containing protein
L3_063_000G1_scaffold_495_25
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

33495..34562
DNA (1068bp) protein (356aa)
Putative membrane protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAG4_9ACTN
Putative membrane protein {ECO:0000313|EMBL:EEP44241.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
hypothetical protein
L3_063_000G1_scaffold_495_26
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(34954..36471)
DNA (1518bp) protein (506aa)
Carboxypeptidase Taq (M32) metallopeptidase {ECO:0000313|EMBL:EEP44240.1}; EC=3.4.17.19 {ECO:0000313|EMBL:EEP44240.1};; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
Carboxypeptidase Taq (EC:3.4.17.19)
Carboxypeptidase Taq (M32) metallopeptidase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAG3_9ACTN
L3_063_000G1_scaffold_495_27
unknown

Not on your lists

36815..37639
DNA (825bp) protein (275aa)

This feature has no annotations

L3_063_000G1_scaffold_495_28
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37636..37911
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZKZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA40353.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
L3_063_000G1_scaffold_495_29
unknown

Not on your lists

37877..38383
DNA (507bp) protein (169aa)

This feature has no annotations

L3_063_000G1_scaffold_495_30
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


38850..39926
DNA (1077bp) protein (359aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FAF9_9ACTN
Displaying items 1-30 of 57 in total

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