ggKbase home page

L3_063_000G1_scaffold_546

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_546_1
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

189..1151
DNA (963bp) protein (321aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N625_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:CDC03824.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Listeria/Bacterioides repeat
L3_063_000G1_scaffold_546_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1205..1585)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47492.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_063_000G1_scaffold_546_3
Fusobacterium necrophorum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(1612..1986)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Fusobacterium necrophorum subsp. funduliforme ATCC 51357 RepID=I3D9H7_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EIJ68370.1}; TaxID=1095747 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium necrophorum subsp. funduliforme ATCC 51357.;"
hypothetical protein
L3_063_000G1_scaffold_546_4
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2037..2561)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6CBN4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62747.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
N-acetyltransferase GCN5
L3_063_000G1_scaffold_546_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2592..3236)
DNA (645bp) protein (215aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium RepID=E9SL17_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF04491.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
N-acetyltransferase GCN5
L3_063_000G1_scaffold_546_6
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3464..4762
DNA (1299bp) protein (433aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Enolase n=5 Tax=Firmicutes RepID=E4LYG4_9CLOT
eno; enolase
L3_063_000G1_scaffold_546_7
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5153..5452
DNA (300bp) protein (100aa)
Sporulation protein YqfC n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9F3_9FIRM
Sporulation protein YqfC {ECO:0000313|EMBL:EOS67689.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L3_063_000G1_scaffold_546_8
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

5445..6650
DNA (1206bp) protein (402aa)
stage IV sporulation protein D n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E2BC
sporulation protein YqfD
Sporulation protein YqfD {ECO:0000313|EMBL:AEE96290.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_063_000G1_scaffold_546_9
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

6836..7132
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000370AEAB
Uncharacterized protein {ECO:0000313|EMBL:CDA64832.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
Uncharacterized protein conserved in bacteria (DUF2325).
L3_063_000G1_scaffold_546_10
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7125..7676
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4L129_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL01599.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_063_000G1_scaffold_546_11
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7705..8130
DNA (426bp) protein (142aa)
Flavodoxin n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W6L6_9CLOT
Flavodoxin {ECO:0000313|EMBL:ENY98645.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
flavodoxin, short chain
L3_063_000G1_scaffold_546_12
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8321..8755
DNA (435bp) protein (145aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium RepID=D3AAM7_9CLOT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFD01129.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
hypothetical protein
L3_063_000G1_scaffold_546_13
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8824..9141
DNA (318bp) protein (106aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VZ47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO59825.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_063_000G1_scaffold_546_14
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9189..9566)
DNA (378bp) protein (126aa)
Iron-dependent transcriptional regulator n=1 Tax=Eubacterium sp. CAG:251 RepID=R6QAW8_9FIRM
Iron-dependent transcriptional regulator {ECO:0000313|EMBL:CDC32945.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
DtxR family iron (metal) dependent repressor
L3_063_000G1_scaffold_546_15
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9761..10756
DNA (996bp) protein (332aa)
PhoH family protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KLL0_9CLOT
PhoH family protein {ECO:0000313|EMBL:CCY67730.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
PhoH family protein
L3_063_000G1_scaffold_546_16
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10958..13093
DNA (2136bp) protein (712aa)
7TM-HD extracellular domain protein n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7RAE5_9THEO
HD superfamily hydrolase
7TM-HD extracellular domain protein {ECO:0000313|EMBL:EEB75112.1}; HD superfamily hydrolase {ECO:0000313|EMBL:KKC29997.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. pacificus DSM 12653.;"
L3_063_000G1_scaffold_546_17
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13090..13599
DNA (510bp) protein (170aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Endoribonuclease YbeY n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A359_MAHA5
hypothetical protein
L3_063_000G1_scaffold_546_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13654..14541
DNA (888bp) protein (296aa)
GTPase Era n=1 Tax=Clostridium sp. CAG:226 RepID=R5B393_9CLOT
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
era; hypothetical protein
L3_063_000G1_scaffold_546_19
unknown

Not on your lists

14704..14832
DNA (129bp) protein (43aa)

This feature has no annotations

L3_063_000G1_scaffold_546_20
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14808..15572
DNA (765bp) protein (255aa)
DNA repair protein RecO n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N382_ANATU
recO; DNA repair protein RecO
Tax=BJP_IG2157_Clostridiales_52_13
L3_063_000G1_scaffold_546_21
Caldicellulosiruptor lactoaceticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

15636..18266
DNA (2631bp) protein (877aa)
Pyruvate, phosphate dikinase n=1 Tax=Caldicellulosiruptor lactoaceticus 6A RepID=G2PTW3_9FIRM
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:AEM73431.1}; TaxID=632516 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor lactoaceticus 6A.;"
pyruvate, phosphate dikinase
L3_063_000G1_scaffold_546_22
unknown

Not on your lists

18393..18764
DNA (372bp) protein (124aa)

This feature has no annotations

L3_063_000G1_scaffold_546_23
unknown

Not on your lists

19000..19362
DNA (363bp) protein (121aa)

This feature has no annotations

L3_063_000G1_scaffold_546_24
unknown

Not on your lists

19465..19821
DNA (357bp) protein (119aa)

This feature has no annotations

L3_063_000G1_scaffold_546_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19868..20107)
DNA (240bp) protein (80aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KV82_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERJ96197.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Helix-turn-helix.
L3_063_000G1_scaffold_546_26
unknown

Not on your lists

20217..20471
DNA (255bp) protein (85aa)

This feature has no annotations

L3_063_000G1_scaffold_546_27
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21098..22108
DNA (1011bp) protein (337aa)
Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U4A9_ETHHY
deoxyguanosinetriphosphate triphosphohydrolase
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L3_063_000G1_scaffold_546_28
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22136..23926
DNA (1791bp) protein (597aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AEA1_9CLOT
L3_063_000G1_scaffold_546_29
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23926..25035
DNA (1110bp) protein (370aa)
RNA polymerase sigma factor SigA n=1 Tax=Clostridium sp. CAG:226 RepID=R5BC16_9CLOT
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_063_000G1_scaffold_546_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25086..25994)
DNA (909bp) protein (303aa)
DNA-entry nuclease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEY5_9FIRM
DNA-entry nuclease {ECO:0000313|EMBL:EGJ46005.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
endonuclease
Displaying items 1-30 of 69 in total

View Taxonomy