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L3_063_000G1_scaffold_637

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Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_637_1
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(240..803)
DNA (564bp) protein (188aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A2J9_SERMA
D,D-heptose 1,7-bisphosphate phosphatase
L3_063_000G1_scaffold_637_2
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

992..2023
DNA (1032bp) protein (344aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
D-methionine transport system ATP-binding protein n=4 Tax=Serratia marcescens RepID=L7ZSI8_SERMA
metN; D-methionine transport system ATP-binding protein
L3_063_000G1_scaffold_637_3
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2016..2669
DNA (654bp) protein (218aa)
D-methionine transport system permease n=5 Tax=Serratia marcescens RepID=L7ZRC1_SERMA
metI; D-methionine ABC transporter, permease protein
D-methionine transport system permease {ECO:0000313|EMBL:AGE19662.1}; TaxID=435998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens WW4.;"
L3_063_000G1_scaffold_637_4
Oryza sativa, Oryza, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

2709..3524
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Oryza sativa subsp. indica RepID=B8BLL3_ORYSI
metQ; DL-methionine transporter substrate-binding subunit
Putative uncharacterized protein {ECO:0000313|EMBL:EEC68546.1}; TaxID=39946 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza.;" source="Oryza sativa subsp. indica (Rice).;"
L3_063_000G1_scaffold_637_5
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3639..4043
DNA (405bp) protein (135aa)
Regulator gene of exopolysaccharide synthesis n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A2Q4_SERMA
rcsF; outer membrane lipoprotein
Outer membrane lipoprotein RcsF {ECO:0000256|HAMAP-Rule:MF_00976}; Flags: Precursor;; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_6
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4040..4747
DNA (708bp) protein (236aa)
Uncharacterized protein n=3 Tax=Serratia marcescens RepID=L7ZPU3_SERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGE19665.1}; TaxID=435998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens WW4.;"
L3_063_000G1_scaffold_637_7
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4860..6578
DNA (1719bp) protein (573aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Serratia marcescens VGH107 RepID=M3C3G8_SERMA
L3_063_000G1_scaffold_637_8
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6647..7330)
DNA (684bp) protein (228aa)
Copper homeostasis lipoprotein n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A1W8_SERMA
lipoprotein involved with copper homeostasis and adhesion
Uncharacterized protein {ECO:0000313|EMBL:EZQ57805.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_9
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7360..7773)
DNA (414bp) protein (138aa)
Petidyl-tRNA hydrolase, ribosome-attached n=2 Tax=Serratia marcescens RepID=L7ZJI1_SERMA
hypothetical protein
Ribosome-associated protein {ECO:0000313|EMBL:EZQ57804.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_10
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7777..8325)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A2Q8_SERMA
YaeQ family protein
Uncharacterized protein {ECO:0000313|EMBL:EZQ57803.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_11
Serratia plymuthica, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8509..8739
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Serratia marcescens EGD-HP20 RepID=U1U3X3_SERMA
UpF0253 protein
UPF0253 protein M621_20060 {ECO:0000256|HAMAP-Rule:MF_01064}; TaxID=1348660 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia plymuthica S13.;"
L3_063_000G1_scaffold_637_12
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8726..8989
DNA (264bp) protein (88aa)
Modulator of Rho-dependent transcription termination n=4 Tax=Serratia marcescens RepID=L7ZSJ5_SERMA
rof; ROF protein
ROF protein {ECO:0000313|EMBL:BAO35326.1}; TaxID=1334564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens SM39.;"
L3_063_000G1_scaffold_637_13
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9040..9354)
DNA (315bp) protein (105aa)
Putative cytochrome C n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A1X4_SERMA
cytochrome c class I
Uncharacterized protein {ECO:0000313|EMBL:EZQ57801.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_14
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9370..10692)
DNA (1323bp) protein (441aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
tRNA (Ile)-lysidine synthase n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A208_SERMA
tilS; tRNA(Ile)-lysidine synthetase
L3_063_000G1_scaffold_637_15
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10749..12194)
DNA (1446bp) protein (482aa)
Putative oligopeptide transporter n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A2R2_SERMA
Transporter YjdL {ECO:0000313|EMBL:EZQ57799.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
amino acid/peptide transporter
L3_063_000G1_scaffold_637_16
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12263..14401)
DNA (2139bp) protein (713aa)
lysine decarboxylase CadA n=1 Tax=Serratia marcescens RepID=UPI0002EA8B1C
lysine decarboxylase CadA
Lysine decarboxylase, inducible {ECO:0000313|EMBL:EZQ57798.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_17
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14497..15840)
DNA (1344bp) protein (448aa)
Predicted lysine/cadaverine transporter n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A2E0_SERMA
Lysine/cadaverine transporter {ECO:0000313|EMBL:EZQ57797.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
cadB; lysine/cadaverine antiporter
L3_063_000G1_scaffold_637_18
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16210..17766)
DNA (1557bp) protein (519aa)
DNA-binding transcriptional activator n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A1X6_SERMA
Uncharacterized protein {ECO:0000313|EMBL:EZQ57796.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
DNA-binding transcriptional activator CadC
L3_063_000G1_scaffold_637_19
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17856..18245)
DNA (390bp) protein (130aa)
lyase n=1 Tax=Serratia marcescens RepID=UPI0002F8BD8A
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxylase I family protein {ECO:0000313|EMBL:EZQ57795.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_20
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18353..20497)
DNA (2145bp) protein (715aa)
lysine decarboxylase LdcC (EC:4.1.1.18)
lysine decarboxylase CadA n=1 Tax=Serratia marcescens RepID=UPI00030DB74C
Lysine decarboxylase, constitutive {ECO:0000313|EMBL:EZQ57794.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_063_000G1_scaffold_637_21
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20609..21568)
DNA (960bp) protein (320aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=3 Tax=Serratia marcescens RepID=L7ZPV6_SERMA
accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit
L3_063_000G1_scaffold_637_22
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21581..25069)
DNA (3489bp) protein (1163aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A218_SERMA
L3_063_000G1_scaffold_637_23
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25147..25740)
DNA (594bp) protein (198aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
ribonuclease HII n=1 Tax=Serratia marcescens RepID=UPI0002F59147
rnhB; ribonuclease HII
L3_063_000G1_scaffold_637_24
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25737..26885)
DNA (1149bp) protein (383aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
Lipid-A-disaccharide synthase n=2 Tax=Serratia marcescens RepID=M3BJT0_SERMA
L3_063_000G1_scaffold_637_25
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26889..27677)
DNA (789bp) protein (263aa)
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
UDP-N-acetylglucosamine acyltransferase n=1 Tax=Serratia marcescens RepID=UPI0002EDC6EF
L3_063_000G1_scaffold_637_26
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27681..28136)
DNA (456bp) protein (152aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=3 Tax=Serratia marcescens RepID=L7ZPW1_SERMA
fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase
L3_063_000G1_scaffold_637_27
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28297..29319)
DNA (1023bp) protein (341aa)
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; Short=UDP-3-O-(3-OHC14)-GlcN N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523};; EC=2.3.1.191 {ECO:0000256|HAMAP-Rule:MF_00523};; UDP-3-O-(3-hydroxytetradecanoyl)glucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltransferase n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A222_SERMA
L3_063_000G1_scaffold_637_28
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29323..29781)
DNA (459bp) protein (153aa)
Chaperone protein skp n=3 Tax=Serratia marcescens RepID=L7ZRE6_SERMA
skp; chaperone protein
Chaperone protein skp {ECO:0000256|PIRNR:PIRNR002094}; TaxID=1334564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens SM39.;"
L3_063_000G1_scaffold_637_29
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29972..32398)
DNA (2427bp) protein (809aa)
outer membrane protein assembly factor YaeT n=1 Tax=Serratia marcescens RepID=UPI00030CCE01
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
outer membrane protein assembly factor YaeT
L3_063_000G1_scaffold_637_30
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32434..33789)
DNA (1356bp) protein (452aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
Protease n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A2F2_SERMA
ecfE; protease
Displaying items 1-30 of 107 in total

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