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L3_063_000G1_scaffold_1440

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_1440_1
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1030)
DNA (1029bp) protein (343aa)
codA; Cytosine deaminase (EC:3.5.4.1)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4B6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98461.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_063_000G1_scaffold_1440_2
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1043..2278)
DNA (1236bp) protein (412aa)
Cytosine permease n=2 Tax=environmental samples RepID=R6FS38_9CLOT
Cytosine permease {ECO:0000313|EMBL:CDB76148.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
codB; Cytosine permease
L3_063_000G1_scaffold_1440_3
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2617..8562)
DNA (5946bp) protein (1982aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Beta-galactosidase (EC:3.2.1.23)
Sortase B cell surface sorting signal n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBP6_9FIRM
L3_063_000G1_scaffold_1440_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9667..10206
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002FC439B
Uncharacterized protein {ECO:0000313|EMBL:AJH01084.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_063_000G1_scaffold_1440_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10203..11045
DNA (843bp) protein (281aa)
Metallophosphoesterase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4G0_9CLOT
Metallophosphoesterase {ECO:0000313|EMBL:EHJ01301.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
calcineurin-like phosphoesterase
L3_063_000G1_scaffold_1440_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11117..12406)
DNA (1290bp) protein (430aa)
Branched-chain amino acid transport system II carrier protein n=2 Tax=Clostridium botulinum B RepID=B2TN46_CLOBB
brnQ; branched-chain amino acid transport system II carrier protein
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:ACD22958.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_063_000G1_scaffold_1440_7
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12792..13652)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0002DBAA99
Uncharacterized protein {ECO:0000313|EMBL:EMZ22324.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
NmrA family protein
L3_063_000G1_scaffold_1440_8
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13652..14074)
DNA (423bp) protein (141aa)
Transcriptional regulator, MarR family n=3 Tax=Firmicutes RepID=E4LPY3_9CLOT
MarR family transcriptional regulator
Tax=BJP_IG2069_Clostridiales_48_15
L3_063_000G1_scaffold_1440_9
unknown

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comp(14602..14721)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_063_000G1_scaffold_1440_10
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14898..16454)
DNA (1557bp) protein (519aa)
yfmM; putative ABC transporter ATP-binding protein YfmM (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4B7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98466.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_063_000G1_scaffold_1440_11
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16538..17398)
DNA (861bp) protein (287aa)
Abortive infection protein n=1 Tax=Clostridium intestinale URNW RepID=U2NP18_9CLOT
abortive infection protein
Abortive infection protein {ECO:0000313|EMBL:CDM70087.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_063_000G1_scaffold_1440_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17704..18273)
DNA (570bp) protein (190aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TPD2_CLOBB
Uncharacterized protein {ECO:0000313|EMBL:AIY78838.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
L3_063_000G1_scaffold_1440_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18378..19433)
DNA (1056bp) protein (352aa)
Bacterial extracellular solute-binding family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VIL7_CLOBI
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJU72878.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
bacterial extracellular solute-binding family protein
L3_063_000G1_scaffold_1440_14
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19596..20144)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y3E1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ02337.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
putative membrane protein
L3_063_000G1_scaffold_1440_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20215..20778)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CPX9_CLOPF
nitroreductase family protein
Nitroreductase family protein {ECO:0000313|EMBL:ABG87668.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_063_000G1_scaffold_1440_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21096..21866)
DNA (771bp) protein (257aa)
Putative Formate/nitrite transporter n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EY12_9CLOT
Putative Formate/nitrite transporter {ECO:0000313|EMBL:CDG01161.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
nirC; nitrite transporter
L3_063_000G1_scaffold_1440_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21931..22716)
DNA (786bp) protein (262aa)
Sirohydrochlorin cobaltochelatase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UX40_CLOBA
Cobalt chelatase {ECO:0000313|EMBL:KIL07718.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
sirohydrochlorin cobaltochelatase
L3_063_000G1_scaffold_1440_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22718..24001)
DNA (1284bp) protein (428aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hemL; glutamate-1-semialdehyde-2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=GSA_CLOBA
L3_063_000G1_scaffold_1440_19
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24050..25015)
DNA (966bp) protein (322aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Clostridium colicanis 209318 RepID=N9WGX5_9CLOT
L3_063_000G1_scaffold_1440_20
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25019..26491)
DNA (1473bp) protein (491aa)
cobA; uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107)
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q5R0_9CLOT
Uroporphyrinogen-III C-methyltransferase {ECO:0000313|EMBL:EKY23236.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
L3_063_000G1_scaffold_1440_21
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26496..27374)
DNA (879bp) protein (293aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EY09_9CLOT
L3_063_000G1_scaffold_1440_22
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27585..28103
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2Q517_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK31214.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
L3_063_000G1_scaffold_1440_23
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28150..29118)
DNA (969bp) protein (323aa)
asrC; sulfite reductase subunit C (EC:1.8.-.-)
Putative Sulfite reductase, subunit C n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F7Z6_9CLOT
Putative Sulfite reductase, subunit C {ECO:0000313|EMBL:CDG01153.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
L3_063_000G1_scaffold_1440_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29132..29923)
DNA (792bp) protein (264aa)
Anaerobic sulfite reductase subunit B n=2 Tax=Clostridium perfringens RepID=H7CWH1_CLOPF
Anaerobic sulfite reductase subunit B {ECO:0000313|EMBL:EIA16956.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
asrB; anaerobic sulfite reductase subunit B
L3_063_000G1_scaffold_1440_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29925..30932)
DNA (1008bp) protein (336aa)
Sulfite reductase, subunit A n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HF79_9CLOT
Sulfite reductase, subunit A {ECO:0000313|EMBL:EEH98485.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
asrA; anaerobic sulfite reductase subunit A
L3_063_000G1_scaffold_1440_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31025..31702)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3H1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98487.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Crp/FNR family transcriptional regulator
L3_063_000G1_scaffold_1440_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31695..32354)
DNA (660bp) protein (220aa)
Precorrin-2 dehydrogenase n=2 Tax=Clostridium botulinum B RepID=B2TPD8_CLOBB
precorrin-2 dehydrogenase
Precorrin-2 dehydrogenase {ECO:0000313|EMBL:ACD24587.1}; Putative precorrin oxidase {ECO:0000313|EMBL:CDH91815.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_063_000G1_scaffold_1440_28
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32312..33517)
DNA (1206bp) protein (402aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Glutamyl-tRNA reductase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G146_CLOPA
hemA; glutamyl-tRNA reductase
L3_063_000G1_scaffold_1440_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33680..34540)
DNA (861bp) protein (287aa)
Anaerobic sulfite reductase subunit C n=2 Tax=Clostridium botulinum B RepID=B2TPE0_CLOBB
anaerobic sulfite reductase subunit C
Nitrite/Sulfite reductase ferredoxin-like half domain protein {ECO:0000313|EMBL:AIY78994.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_063_000G1_scaffold_1440_30
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34702..35343
DNA (642bp) protein (214aa)
Putative undecaprenyl diphosphate synthase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F7Z3_9CLOT
Dihydroorotate dehydrogenase {ECO:0000313|EMBL:KGK89535.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
undecaprenyl pyrophosphate synthetase
Displaying items 1-30 of 83 in total

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