ggKbase home page

L3_063_000G1_scaffold_1085

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_1085_1
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..202)
DNA (201bp) protein (67aa)
RNA polymerase sigma factor n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GTA4_CLOLD
RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L3_063_000G1_scaffold_1085_2
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(445..963)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N2G7_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDK35313.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
L3_063_000G1_scaffold_1085_3
unknown

Not on your lists

comp(1021..1161)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_063_000G1_scaffold_1085_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1223..1474)
DNA (252bp) protein (84aa)
Zinc import ATP-binding protein ZnuC n=1 Tax=Clostridium botulinum Bf RepID=B1QND9_CLOBO
Helix-turn-helix family protein {ECO:0000313|EMBL:AJE10207.1}; TaxID=1408283 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CDC_1436.;"
L3_063_000G1_scaffold_1085_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1738..2148
DNA (411bp) protein (137aa)
Hypothetical transcriptional regulator n=1 Tax=Clostridium botulinum Bf RepID=B1QNE0_CLOBO
Helix-turn-helix family protein {ECO:0000313|EMBL:AJE11996.1}; TaxID=1408283 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CDC_1436.;"
DNA-binding protein
L3_063_000G1_scaffold_1085_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2148..3848
DNA (1701bp) protein (567aa)
Resolvase, N domain protein n=1 Tax=Clostridium botulinum Bf RepID=B1QNE1_CLOBO
Recombinase family protein {ECO:0000313|EMBL:AJE10212.1}; TaxID=1408283 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CDC_1436.;"
Resolvase domain
L3_063_000G1_scaffold_1085_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3798..4619)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3I8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97703.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
pyridine nucleotide-disulfide oxidoreductase family protein
L3_063_000G1_scaffold_1085_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4613..5605)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDY9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97702.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
L3_063_000G1_scaffold_1085_9
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5713..6879)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFX5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97701.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
D-alanyl-D-alanine carboxypeptidase family protein
L3_063_000G1_scaffold_1085_10
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7007..7606
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EKS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01832.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_063_000G1_scaffold_1085_11
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7618..8100
DNA (483bp) protein (161aa)
Sporulation protein YtfJ n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H784_9CLOT
Sporulation protein YtfJ {ECO:0000313|EMBL:EEH97699.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ytfJ; sporulation protein YtfJ
L3_063_000G1_scaffold_1085_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8268..8876)
DNA (609bp) protein (203aa)
Segregation and condensation protein B n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2N2_9CLOT
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
scpB; segregation and condensation protein B
L3_063_000G1_scaffold_1085_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8869..9615)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3I5_9CLOT
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
scpA; segregation and condensation protein A
L3_063_000G1_scaffold_1085_14
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9803..11026)
DNA (1224bp) protein (408aa)
dacF; D-alanyl-D-alanine carboxypeptidase DacF (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDY8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97696.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_063_000G1_scaffold_1085_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11112..12416)
DNA (1305bp) protein (435aa)
pdp; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFX2_9CLOT
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EEH97695.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_063_000G1_scaffold_1085_16
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12602..13480)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H783_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97694.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
phage integrase family protein
L3_063_000G1_scaffold_1085_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13551..14186)
DNA (636bp) protein (212aa)
Stage II sporulation protein M n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2N1_9CLOT
Stage II sporulation protein M {ECO:0000313|EMBL:EEH97693.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
stage II sporulation protein M
L3_063_000G1_scaffold_1085_18
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14347..14865)
DNA (519bp) protein (173aa)
YffH/AdpP family nudix-type nucleoside diphosphatase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3I4_9CLOT
YffH/AdpP family nudix-type nucleoside diphosphatase {ECO:0000313|EMBL:EEH97692.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NUDIX domain protein
L3_063_000G1_scaffold_1085_19
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15379..16185)
DNA (807bp) protein (269aa)
Sporulation transcription factor Spo0A n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDY7_9CLOT
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
spo0A; sporulation transcription factor Spo0A
L3_063_000G1_scaffold_1085_20
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16528..17718)
DNA (1191bp) protein (397aa)
spoIVB; stage IV sporulation protein B (EC:3.4.21.-)
Stage IV sporulation protein B n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFW9_9CLOT
Stage IV sporulation protein B {ECO:0000313|EMBL:EEH97690.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_063_000G1_scaffold_1085_21
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17900..19600)
DNA (1701bp) protein (567aa)
DNA repair protein RecN n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H782_9CLOT
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
recN; DNA repair protein RecN
L3_063_000G1_scaffold_1085_22
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19619..20068)
DNA (450bp) protein (150aa)
Arginine repressor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2M9_9CLOT
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
argR; arginine repressor
L3_063_000G1_scaffold_1085_23
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20070..20921)
DNA (852bp) protein (284aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3I2_9CLOT
ATP-NAD/AcoX kinase
L3_063_000G1_scaffold_1085_24
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21024..21833)
DNA (810bp) protein (270aa)
Hemolysin TlyA family protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDY4_9CLOT
Hemolysin TlyA family protein {ECO:0000313|EMBL:EEH97686.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hemolysin TlyA family protein
L3_063_000G1_scaffold_1085_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21845..23704)
DNA (1860bp) protein (620aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFW6_9CLOT
L3_063_000G1_scaffold_1085_26
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23724..24599)
DNA (876bp) protein (292aa)
ispA; farnesyl diphosphate synthase IspA (EC:2.5.1.10)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H781_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97684.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_063_000G1_scaffold_1085_27
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24592..24804)
DNA (213bp) protein (71aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease VII, small subunit n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2M8_9CLOT
L3_063_000G1_scaffold_1085_28
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24820..26019)
DNA (1200bp) protein (400aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Exodeoxyribonuclease VII, large subunit n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3I0_9CLOT
xseA; exodeoxyribonuclease VII large subunit
L3_063_000G1_scaffold_1085_29
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26009..26857)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDY3_9CLOT
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain protein
L3_063_000G1_scaffold_1085_30
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26879..27283)
DNA (405bp) protein (135aa)
Transcription antitermination factor NusB n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFW3_9CLOT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
nusB; transcription antitermination factor NusB
Displaying items 1-30 of 50 in total

View Taxonomy