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L3_063_000G1_scaffold_624

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_624_1
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

206..571
DNA (366bp) protein (122aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
mRNA interferase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAG8_9FIRM
Growth inhibitor
L3_063_000G1_scaffold_624_2
unknown

Not on your lists

613..1242
DNA (630bp) protein (210aa)

This feature has no annotations

L3_063_000G1_scaffold_624_3
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

1181..2827
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D423_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX71632.1}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
polysaccharide deacetylase
L3_063_000G1_scaffold_624_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(2880..4229)
DNA (1350bp) protein (450aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
class II fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IT66_9FIRM
L3_063_000G1_scaffold_624_5
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4400..13075)
DNA (8676bp) protein (2892aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:156 RepID=R5Z3I9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA28571.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
hypothetical protein
L3_063_000G1_scaffold_624_6
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

14266..16311
DNA (2046bp) protein (682aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DDL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74952.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_063_000G1_scaffold_624_7
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

16274..17065
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D425_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX74953.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_063_000G1_scaffold_624_8
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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17062..18021
DNA (960bp) protein (320aa)
MoxR-like ATPases (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D691_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75745.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
L3_063_000G1_scaffold_624_9
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

18021..19094
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ETL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX91942.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_063_000G1_scaffold_624_10
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19097..21217
DNA (2121bp) protein (707aa)
Transglutaminase-like enzymes putative cysteine proteases n=1 Tax=Dorea sp. CAG:105 RepID=R5D6E8_9FIRM
Transglutaminase-like enzymes putative cysteine proteases {ECO:0000313|EMBL:CCX75743.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_063_000G1_scaffold_624_11
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21236..26485
DNA (5250bp) protein (1750aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AW15_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA50796.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L3_063_000G1_scaffold_624_12
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

26955..27386
DNA (432bp) protein (144aa)
Response regulator receiver protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HVN4_9FIRM
Response regulator receiver protein {ECO:0000313|EMBL:CCY28541.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L3_063_000G1_scaffold_624_13
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(27341..28615)
DNA (1275bp) protein (425aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IH46_9FIRM
L3_063_000G1_scaffold_624_14
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

28700..29665
DNA (966bp) protein (322aa)
Putative LysR family transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LM60_9FIRM
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CDB86950.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative LysR family transcriptional regulator
L3_063_000G1_scaffold_624_15
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29837..32032)
DNA (2196bp) protein (732aa)
Tex-like protein n=1 Tax=Oscillibacter sp. KLE 1745 RepID=U2Q8Z7_9FIRM
Tex-like protein {ECO:0000313|EMBL:ERK59275.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Tex-like protein
L3_063_000G1_scaffold_624_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(32790..33428)
DNA (639bp) protein (213aa)
Helix-turn-helix domain protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LUN7_9FIRM
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDB87354.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
helix-turn-helix domain-containing protein
L3_063_000G1_scaffold_624_17
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33646..34218
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AGS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA51203.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L3_063_000G1_scaffold_624_18
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34306..35190
DNA (885bp) protein (295aa)
DegV family EDD domain-containing protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXV9_9FIRM
DegV family EDD domain-containing protein {ECO:0000313|EMBL:KJF38517.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DegV family protein
L3_063_000G1_scaffold_624_19
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(35336..36886)
DNA (1551bp) protein (517aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16)
Ribonuclease Y n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAL4_9FIRM
L3_063_000G1_scaffold_624_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37295..39004)
DNA (1710bp) protein (570aa)
Resolvase, N-terminal domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SH92_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDP20495.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_063_000G1_scaffold_624_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39103..39306)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9E0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95489.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_063_000G1_scaffold_624_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39663..39905)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CBX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI81523.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_063_000G1_scaffold_624_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39898..40323)
DNA (426bp) protein (142aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BTL2_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ERI81524.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
sigma-70, region 4 family
L3_063_000G1_scaffold_624_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40863..41939)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SHK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP20599.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L3_063_000G1_scaffold_624_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41936..42811)
DNA (876bp) protein (292aa)
ABC transporter, ATP-binding protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NXA0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM99327.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ABC-type multidrug transport system, ATPase component
L3_063_000G1_scaffold_624_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42898..44076)
DNA (1179bp) protein (393aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SHK6_9FIRM
Signal transduction histidine kinase
L3_063_000G1_scaffold_624_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44064..44738)
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K804_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL00967.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_063_000G1_scaffold_624_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45136..45525
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZLT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ05878.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Helix-turn-helix.
L3_063_000G1_scaffold_624_29
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45779..46108
DNA (330bp) protein (110aa)
Bacterial mobilization protein MobC n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DJ53_9CLOT
Bacterial mobilization protein MobC {ECO:0000313|EMBL:ERI81532.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_063_000G1_scaffold_624_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46069..47415
DNA (1347bp) protein (449aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZLS8_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EFQ05876.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Relaxase/Mobilisation nuclease domain.
Displaying items 1-30 of 41 in total

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