ggKbase home page

L3_063_000G1_scaffold_1188

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_1188_1
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..5817)
DNA (5817bp) protein (1939aa)
UPI0003D63BAE related cluster n=1 Tax=unknown RepID=UPI0003D63BAE
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ETI93231.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
putative cell surface protein
L3_063_000G1_scaffold_1188_2
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(5903..6718)
DNA (816bp) protein (272aa)
LicD family protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LXN9_9FIRM
LicD family protein {ECO:0000313|EMBL:CDB88454.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
lipopolysaccharide cholinephosphotransferase
L3_063_000G1_scaffold_1188_3
Paenibacillus sp. FSL H7-0737, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6745..8007)
DNA (1263bp) protein (421aa)
Glycosyl transferase group 1 n=1 Tax=Firmicutes bacterium CAG:313 RepID=R6YTQ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ25711.1}; TaxID=1536775 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0737.;"
L3_063_000G1_scaffold_1188_4
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8004..9287)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EXF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE06132.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L3_063_000G1_scaffold_1188_5
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9284..10051)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NDB0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC10153.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
glycosyl transferase family 2
L3_063_000G1_scaffold_1188_6
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(10067..10702)
DNA (636bp) protein (212aa)
PHP domain protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M249_9FIRM
PHP domain protein {ECO:0000313|EMBL:CDB88456.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
PHP domain-containing protein
L3_063_000G1_scaffold_1188_7
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(10707..11465)
DNA (759bp) protein (253aa)
capsular exopolysaccharide family protein (EC:2.7.10.2)
Capsular polysaccharide biosynthesis protein putative tyrosine-protein kinase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MRI2_9FIRM
Capsular polysaccharide biosynthesis protein putative tyrosine-protein kinase {ECO:0000313|EMBL:CDB88457.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_063_000G1_scaffold_1188_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(11452..12234)
DNA (783bp) protein (261aa)
Chain length determinant protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LLX6_9FIRM
Chain length determinant protein {ECO:0000313|EMBL:CDB88458.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
MPA1 family polysaccharide export protein
L3_063_000G1_scaffold_1188_9
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(12265..12930)
DNA (666bp) protein (222aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
MW0103 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LXP4_9FIRM
MW0103 {ECO:0000313|EMBL:CDB88459.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_063_000G1_scaffold_1188_10
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

13318..14346
DNA (1029bp) protein (343aa)
Site-specific recombinase XerC n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TBK5_9FIRM
Site-specific recombinase XerC {ECO:0000313|EMBL:CDC69605.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Site-specific recombinase XerC
L3_063_000G1_scaffold_1188_11
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(14587..15336)
DNA (750bp) protein (250aa)
4Fe-4S binding domain protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DCC1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCX73496.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_063_000G1_scaffold_1188_12

Not on your lists

comp(15333..15743)
DNA (411bp) protein (137aa)
def; peptide deformylase (EC:3.5.1.88)
N-formylmethionyl-tRNA deformylase n=1 Tax=human gut metagenome RepID=K1TF33_9ZZZZ
N-formylmethionyl-tRNA deformylase {ECO:0000313|EMBL:EKC68388.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_063_000G1_scaffold_1188_13
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15998..16939
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PKY9_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHO85723.1}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium infirmum F0142.;"
hypothetical protein
L3_063_000G1_scaffold_1188_14
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16996..17979
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GQP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27738.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L3_063_000G1_scaffold_1188_15
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17998..18282
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JJW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31759.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_063_000G1_scaffold_1188_16
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

18430..19062
DNA (633bp) protein (211aa)
von Willebrand factor type A domain protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I328_9FIRM
von Willebrand factor type A domain protein {ECO:0000313|EMBL:CDB44528.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
hypothetical protein
L3_063_000G1_scaffold_1188_17
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19111..19857)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A8N3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD54675.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Acetyltransferase (GNAT) family.
L3_063_000G1_scaffold_1188_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

20349..21065
DNA (717bp) protein (239aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IMR6_9FIRM
L3_063_000G1_scaffold_1188_19
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

21232..22377
DNA (1146bp) protein (382aa)
RNA polymerase sigma factor SigA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LH65_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
RpoD4; RNA polymerase sigma factor RpoD
L3_063_000G1_scaffold_1188_20
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

comp(22477..23868)
DNA (1392bp) protein (464aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HAJ7_9FIRM
L3_063_000G1_scaffold_1188_21
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(24017..24295)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M0N0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87961.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L3_063_000G1_scaffold_1188_22
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24292..25005)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BD32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50762.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_063_000G1_scaffold_1188_23
unknown

Not on your lists

comp(25071..25247)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_063_000G1_scaffold_1188_24
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25265..28513)
DNA (3249bp) protein (1083aa)
Surface protein C n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EM89_9FIRM
Surface protein C {ECO:0000313|EMBL:CDE03571.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
hypothetical protein
L3_063_000G1_scaffold_1188_25
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

29224..30564
DNA (1341bp) protein (447aa)
Putative hydrolase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LY42_9FIRM
Putative hydrolase {ECO:0000313|EMBL:CDB87031.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
putative hydrolase
L3_063_000G1_scaffold_1188_26
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30661..33603
DNA (2943bp) protein (981aa)
Putative oxidoreductase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GPN7_9FIRM
Putative oxidoreductase {ECO:0000313|EMBL:CDB27398.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative oxidoreductase
L3_063_000G1_scaffold_1188_27
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33662..34093
DNA (432bp) protein (144aa)
Oxidoreductase n=1 Tax=Clostridium sp. CAG:58 RepID=R6R8H9_9CLOT
Oxidoreductase {ECO:0000313|EMBL:CDC45223.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_063_000G1_scaffold_1188_28
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34083..34823
DNA (741bp) protein (247aa)
Sel1 repeat protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GW29_9FIRM
Sel1 repeat protein {ECO:0000313|EMBL:CDB25481.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_063_000G1_scaffold_1188_29
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(34879..36471)
DNA (1593bp) protein (531aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EZ84_9FIRM
L3_063_000G1_scaffold_1188_30
unknown

Not on your lists

comp(36584..36754)
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying 30 items

View Taxonomy