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L3_063_000G1_scaffold_1289

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_1289_1

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comp(498..1442)
DNA (945bp) protein (315aa)
Alpha/beta hydrolase n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G371_9PROT
Alpha/beta hydrolase {ECO:0000313|EMBL:AHF23672.1}; TaxID=1393450 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig1532b.;"
alpha/beta hydrolase
L3_063_000G1_scaffold_1289_2
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1583..2524
DNA (942bp) protein (314aa)
DegV family protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3Z7_9PROT
DegV family protein {ECO:0000313|EMBL:CDE21875.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
degV family protein
L3_063_000G1_scaffold_1289_3
unknown

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2735..3460
DNA (726bp) protein (242aa)

This feature has no annotations

L3_063_000G1_scaffold_1289_4
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3488..8935
DNA (5448bp) protein (1816aa)
beta-hexosaminidase (EC:3.2.1.- 3.2.1.52)
Glycosyl hydrolase family 20 catalytic domain protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GT73_9FIRM
Glycosyl hydrolase family 20 catalytic domain protein {ECO:0000313|EMBL:CDB24929.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_063_000G1_scaffold_1289_5
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9216..9872)
DNA (657bp) protein (219aa)
Regulatory protein TetR n=1 Tax=Clostridium sp. CAG:510 RepID=R6C371_9CLOT
Regulatory protein TetR {ECO:0000313|EMBL:CDA67634.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
regulatory protein TetR
L3_063_000G1_scaffold_1289_6
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(9869..11071)
DNA (1203bp) protein (401aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6H7P3_9FIRM
L3_063_000G1_scaffold_1289_7
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(11136..12335)
DNA (1200bp) protein (400aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IE72_9FIRM
L3_063_000G1_scaffold_1289_8
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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12467..13600
DNA (1134bp) protein (378aa)
UPF0348 protein BN515_01509 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYU5_9FIRM
UPF0348 protein BN515_01509 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_063_000G1_scaffold_1289_9
unknown

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13668..14075
DNA (408bp) protein (136aa)

This feature has no annotations

L3_063_000G1_scaffold_1289_10
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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14204..14404
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=2 Tax=environmental samples RepID=R5IHC9_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
LSU ribosomal protein L31P
L3_063_000G1_scaffold_1289_11
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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14538..15809
DNA (1272bp) protein (424aa)
GTPase HflX n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EJF9_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hlfX; putative GTP-binding protein HflX
L3_063_000G1_scaffold_1289_12
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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15806..16432
DNA (627bp) protein (209aa)
IMPACT family member yvyE n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GYH3_9FIRM
IMPACT family member yvyE {ECO:0000313|EMBL:CDB29515.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
hypothetical protein
L3_063_000G1_scaffold_1289_13
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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16469..17485
DNA (1017bp) protein (339aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HUI3_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
deoxyguanosinetriphosphate triphosphohydrolase-like protein
L3_063_000G1_scaffold_1289_14
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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17500..19251
DNA (1752bp) protein (584aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LYV0_9FIRM
L3_063_000G1_scaffold_1289_15
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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19255..20373
DNA (1119bp) protein (373aa)
RNA polymerase sigma factor SigA n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MNG5_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
RNA polymerase, sigma 38 subunit, RpoS
L3_063_000G1_scaffold_1289_16
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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20486..20716
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IS75_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Acyl carrier protein
L3_063_000G1_scaffold_1289_17
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists

21133..22722
DNA (1590bp) protein (530aa)
dnaX; DNA polymerase III gamma/tau subunit (EC:2.7.7.7)
DNA polymerase III subunit gamma and tau n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HUI9_9FIRM
DNA polymerase III subunit gamma and tau {ECO:0000313|EMBL:CDB29522.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_063_000G1_scaffold_1289_18
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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22925..23269
DNA (345bp) protein (115aa)
Nucleoid-associated protein BN515_01758 n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MP56_9FIRM
Nucleoid-associated protein BN515_01758 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_063_000G1_scaffold_1289_19
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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23269..23868
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LJH1_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
recR; recombination protein RecR
L3_063_000G1_scaffold_1289_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23935..24810)
DNA (876bp) protein (292aa)
EDD domain protein, DegV family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRD3_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EDN01629.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_063_000G1_scaffold_1289_21
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(24816..25448)
DNA (633bp) protein (211aa)
Transcriptional regulator TetR family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AUR8_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CCX45709.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
hypothetical protein
L3_063_000G1_scaffold_1289_22
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(25566..26294)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5INY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY43800.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L3_063_000G1_scaffold_1289_23
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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comp(26291..28000)
DNA (1710bp) protein (570aa)
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II (EC:6.2.1.3)
AMP-binding enzyme n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HWB4_9FIRM
AMP-binding enzyme {ECO:0000313|EMBL:CDB30057.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
L3_063_000G1_scaffold_1289_24
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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28467..30827
DNA (2361bp) protein (787aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent helicase PcrA n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1P1_9FIRM
L3_063_000G1_scaffold_1289_25
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

30876..31520
DNA (645bp) protein (215aa)
Sporulation protein YunB n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MR77_9FIRM
Sporulation protein YunB {ECO:0000313|EMBL:CDB88342.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_063_000G1_scaffold_1289_26
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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31517..33493
DNA (1977bp) protein (659aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6HXU9_9FIRM
Displaying 26 items

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