ggKbase home page

L3_063_000G1_scaffold_2499

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_063_000G1_scaffold_2499_1
unknown

Not on your lists

522..1109
DNA (588bp) protein (196aa)

This feature has no annotations

L3_063_000G1_scaffold_2499_2
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1221..2438)
DNA (1218bp) protein (406aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
Tyrosine--tRNA ligase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N4Q6_SLAHD
tyrosyl-tRNA synthetase
L3_063_000G1_scaffold_2499_3
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2664..3545)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YMZ3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ84846.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
chromosome partitioning ATPase
L3_063_000G1_scaffold_2499_4
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3729..5960)
DNA (2232bp) protein (744aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YMH1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ84847.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
penicillin-binding protein, 1A family
L3_063_000G1_scaffold_2499_5
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

6029..8467
DNA (2439bp) protein (813aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YN72_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ84848.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
collagenase-like protease
L3_063_000G1_scaffold_2499_6
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8795..12430
DNA (3636bp) protein (1212aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YYV1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EJZ84844.1}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
Cna B domain-containing protein
L3_063_000G1_scaffold_2499_7
Eggerthella sp. CAG:209, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(12515..12871)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Eggerthella sp. CAG:209 RepID=R6H6Z7_9ACTN
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262875 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:209.;"
50S ribosomal protein L20
L3_063_000G1_scaffold_2499_8
Coriobacteriaceae bacterium 68-1-3, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(12894..13091)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YMG7_9ACTN
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1531429 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae.;" source="Coriobacteriaceae bacterium 68-1-3.;"
L3_063_000G1_scaffold_2499_9
Slackia piriformis, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13110..13688)
DNA (579bp) protein (193aa)
Translation initiation factor IF-3 n=1 Tax=Slackia piriformis YIT 12062 RepID=K0YMY7_9ACTN
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=742818 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia piriformis YIT 12062.;"
translation initiation factor 3
L3_063_000G1_scaffold_2499_10
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13907..14809
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WI33_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71608.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
histidinol phosphate phosphatase HisJ family
L3_063_000G1_scaffold_2499_11
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14832..15149)
DNA (318bp) protein (106aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hisE; phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8X7_9ACTN
L3_063_000G1_scaffold_2499_12
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15152..15490)
DNA (339bp) protein (113aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Collinsella sp. CAG:398 RepID=R6YY06_9ACTN
L3_063_000G1_scaffold_2499_13
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15716..16498)
DNA (783bp) protein (261aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Collinsella sp. CAG:289 RepID=R7D0W2_9ACTN
imidazole glycerol phosphate synthase subunit hisF
L3_063_000G1_scaffold_2499_14
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16492..17241)
DNA (750bp) protein (250aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:398.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Collinsella sp. CAG:398 RepID=R6Z429_9ACTN
L3_063_000G1_scaffold_2499_15
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17238..17978)
DNA (741bp) protein (247aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Collinsella sp. CAG:289 RepID=R7D3Y1_9ACTN
L3_063_000G1_scaffold_2499_16
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17978..18565)
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBZ4_9ACTN
Displaying 16 items

View Taxonomy